Guide to the Human Genome
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Name: AGGF1 Sequence: fasta or formatted (714aa) NCBI GI: 39725952
Description:

angiogenic factor VG5Q

Referenced in:

RNA-binding Proteins
TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         32           3
 C cysteine            1.0          7           1
 D aspartate           7.1         51           2
 E glutamate          10.8         77           3
 F phenylalanine       2.5         18           1
 G glycine             5.7         41           3
 H histidine           2.9         21           2
 I isoleucine          4.2         30           2
 K lysine              8.8         63           3
 L leucine             6.6         47           2
 M methionine          1.1          8           1
 N asparagine          4.8         34           2
 P proline             5.6         40           4
 Q glutamine           4.9         35           2
 R arginine            4.9         35           2
 S serine              8.7         62           2
 T threonine           6.6         47           1
 V valine              5.0         36           1
 W tryptophan          0.7          5           1
 Y tyrosine            3.5         25           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   angiogenic factor VG5Q 
RBM5                  0.029   RNA binding motif protein 5 
RBM10                 0.024   RNA binding motif protein 10 isoform 1 
RBM10                 0.024   RNA binding motif protein 10 isoform 2 
CCDC75                0.020   coiled-coil domain containing 75 
GPATCH2               0.018   G patch domain containing 2 
PINX1                 0.018   PIN2-interacting protein 1 
SFRS14                0.017   splicing factor, arginine/serine-rich 14 
SFRS14                0.017   splicing factor, arginine/serine-rich 14 
SF4                   0.016   splicing factor 4 
DSPP                  0.015   dentin sialophosphoprotein preproprotein 
NKRF                  0.015   transcription factor NRF 
KIF5B                 0.014   kinesin family member 5B 
PDE4DIP               0.013   phosphodiesterase 4D interacting protein isoform 2 [...
PDE4DIP               0.013   phosphodiesterase 4D interacting protein isoform 5 [...
PDE4DIP               0.013   phosphodiesterase 4D interacting protein isoform 1 ...
BOD1L                 0.013   biorientation of chromosomes in cell division 1-like...
GPATCH8               0.012   G patch domain containing 8 
HIP1                  0.012   huntingtin interacting protein 1 
GOLGA4                0.011   golgi autoantigen, golgin subfamily a, 4 
CHERP                 0.011   calcium homeostasis endoplasmic reticulum protein [...
CDC2L2                0.011   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.011   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
SON                   0.011   SON DNA-binding protein isoform F 
CDK5RAP2              0.011   CDK5 regulatory subunit associated protein 2 isoform...
CDK5RAP2              0.011   CDK5 regulatory subunit associated protein 2 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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