Guide to the Human Genome
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Name: HOXA6 Sequence: fasta or formatted (233aa) NCBI GI: 13489077
Description:

homeobox A6

Referenced in:

HOX Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         16           1
 C cysteine            2.1          5           1
 D aspartate           4.3         10           1
 E glutamate           5.2         12           1
 F phenylalanine       4.3         10           1
 G glycine             8.6         20           1
 H histidine           1.7          4           1
 I isoleucine          2.1          5           1
 K lysine              5.6         13           2
 L leucine             6.9         16           1
 M methionine          1.7          4           1
 N asparagine          3.9          9           1
 P proline             6.4         15           1
 Q glutamine           6.4         15           2
 R arginine            7.3         17           4
 S serine             12.0         28           3
 T threonine           4.3         10           1
 V valine              1.7          4           1
 W tryptophan          1.3          3           1
 Y tyrosine            7.3         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox A6 
HOXB6                 0.470   homeobox B6 
HOXC6                 0.388   homeobox C6 isoform 1 
HOXC6                 0.282   homeobox C6 isoform 2 
HOXA5                 0.244   homeobox A5 
HOXB7                 0.241   homeobox B7 
HOXB5                 0.233   homeobox B5 
HOXA7                 0.228   homeobox A7 
HOXD4                 0.220   homeobox D4 
HOXA4                 0.220   homeobox A4 
HOXC5                 0.213   homeobox C5 
HOXB4                 0.209   homeobox B4 
HOXC4                 0.209   homeobox C4 
HOXC4                 0.209   homeobox C4 
HOXC8                 0.203   homeobox C8 
HOXB8                 0.198   homeobox B8 
HOXD8                 0.194   homeobox D8 
HOXD3                 0.181   homeobox D3 
HOXC9                 0.162   homeobox C9 
HOXD9                 0.157   homeobox D9 
HOXA3                 0.153   homeobox A3 isoform a 
HOXA3                 0.153   homeobox A3 isoform a 
HOXA3                 0.149   homeobox A3 isoform b 
HOXA9                 0.147   homeobox A9 
HOXB3                 0.147   homeobox B3 
PDX1                  0.142   pancreatic and duodenal homeobox 1 
HOXA2                 0.140   homeobox A2 
HOXB9                 0.140   homeobox B9 
HOXC10                0.138   homeobox C10 
HOXA10                0.136   homeobox A10 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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