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Search of human proteins with 20302139
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20302139 cystatin F [Homo sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20302139 cystatin F [Homo sapiens] 351 1e-97
gi|4503107 cystatin C precursor [Homo sapiens] 77 7e-15
gi|19882251 cystatin SN precursor [Homo sapiens] 69 1e-12
gi|4503109 cystatin S precursor [Homo sapiens] 69 2e-12
gi|4504893 kininogen 1 isoform 2 [Homo sapiens] 66 1e-11
gi|156231037 kininogen 1 isoform 1 [Homo sapiens] 66 1e-11
gi|4503105 cystatin SA precursor [Homo sapiens] 66 1e-11
gi|4503113 cystatin M precursor [Homo sapiens] 66 2e-11
gi|19882259 cystatin-like 1 precursor [Homo sapiens] 64 6e-11
gi|19882256 cystatin D precursor [Homo sapiens] 59 2e-09
gi|4885163 cystatin 8 precursor [Homo sapiens] 58 3e-09
gi|19882249 cystatin 11 isoform 1 precursor [Homo sapiens] 45 3e-05
gi|18104940 cystatin 9-like precursor [Homo sapiens] 44 6e-05
gi|58331240 fetuin B [Homo sapiens] 37 0.008
gi|5902118 secreted phosphoprotein 2, 24kDa precursor [Homo sapi... 33 0.15
gi|238624132 large conductance calcium-activated potassium chann... 31 0.43
gi|238624130 large conductance calcium-activated potassium chann... 31 0.43
gi|62388890 large conductance calcium-activated potassium channe... 31 0.43
gi|26638650 large conductance calcium-activated potassium channe... 31 0.43
gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo sapi... 31 0.56
gi|39725717 coiled-coil domain containing 141 [Homo sapiens] 29 1.6
gi|63003897 transcription factor NRF [Homo sapiens] 28 3.7
gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [H... 28 4.8
gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [H... 28 4.8
gi|18641364 protein tyrosine phosphatase, receptor type, C isofo... 27 6.2
gi|18641347 protein tyrosine phosphatase, receptor type, C isofo... 27 6.2
gi|18641362 protein tyrosine phosphatase, receptor type, C isofo... 27 6.2
gi|148613884 netrin 1 [Homo sapiens] 27 6.2
gi|209862887 hypothetical protein LOC81556 isoform 1 [Homo sapiens] 27 8.1
gi|13540586 hypothetical protein LOC81556 isoform 2 [Homo sapiens] 27 8.1
>gi|20302139 cystatin F [Homo sapiens]
Length = 167
Score = 351 bits (901), Expect = 1e-97
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MLPEKALHGHPQLPRTVPTRAAMRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGF 60
MLPEKALHGHPQLPRTVPTRAAMRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGF
Sbjct: 1 MLPEKALHGHPQLPRTVPTRAAMRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGF 60
Query: 61 PKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTT 120
PKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTT
Sbjct: 61 PKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTT 120
Query: 121 CKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRCH 167
CKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRCH
Sbjct: 121 CKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRCH 167
>gi|4503107 cystatin C precursor [Homo sapiens]
Length = 146
Score = 77.0 bits (188), Expect = 7e-15
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 23 MRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKF 82
+RA LLA + L+ SP S G P + GV +A ++V ++
Sbjct: 5 LRAPLLLLAILAVALAV----SPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY 60
Query: 83 NNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQ 142
N +NDM+ + ++ RA QIV G+ Y L+VE+GRTTC K Q LD+C F LK+
Sbjct: 61 NKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQP-NLDNCPFHDQPHLKR 119
Query: 143 TLSCYSEVWVVPW 155
C +++ VPW
Sbjct: 120 KAFCSFQIYAVPW 132
>gi|19882251 cystatin SN precursor [Homo sapiens]
Length = 141
Score = 69.3 bits (168), Expect = 1e-12
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 55 RVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEV 114
R+ PG ND V +A +++ ++N T D + + R+ RA Q V G+ Y +V
Sbjct: 28 RIIPGGIYNADLNDEWVQRALHFAISEYNKATKDDYYRRPLRVLRARQQTVGGVNYFFDV 87
Query: 115 EIGRTTCKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRC 166
E+GRT C K+Q LD C F L++ C E++ VPW + RC
Sbjct: 88 EVGRTICTKSQP-NLDTCAFHEQPELQKKQLCSFEIYEVPWENRRSLVKSRC 138
>gi|4503109 cystatin S precursor [Homo sapiens]
Length = 141
Score = 68.9 bits (167), Expect = 2e-12
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 35 LVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKE 94
L+++T G + ++ +R+ PG ND V +A +++ ++N T D + +
Sbjct: 10 LLMATLAGALASSSKEE--NRIIPGGIYDADLNDEWVQRALHFAISEYNKATEDEYYRRP 67
Query: 95 SRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVP 154
++ RA Q G+ Y +VE+GRT C K+Q LD C F L++ C E++ VP
Sbjct: 68 LQVLRAREQTFGGVNYFFDVEVGRTICTKSQP-NLDTCAFHEQPELQKKQLCSFEIYEVP 126
Query: 155 WLQHFEVPVLRC 166
W + RC
Sbjct: 127 WEDRMSLVNSRC 138
>gi|4504893 kininogen 1 isoform 2 [Homo sapiens]
Length = 427
Score = 66.2 bits (160), Expect = 1e-11
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 54 SRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLE 113
+++ G P+ I TN P + + +++ K N N F FK + +A VQ+V G KY ++
Sbjct: 261 TKICVGCPRDIPTNSPELEETLTHTITKLNAENNATFYFKIDNVKKARVQVVAGKKYFID 320
Query: 114 VEIGRTTCKKNQHLRL-DDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRC 166
TTC K + L + C+ L Q+L C +EV+VVPW + P + C
Sbjct: 321 FVARETTCSKESNEELTESCE---TKKLGQSLDCNAEVYVVPWEKKI-YPTVNC 370
Score = 42.7 bits (99), Expect = 1e-04
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 64 IKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKK 123
I T P + R+ ++ FNN T LF + + RA Q+V GL + + I +T C K
Sbjct: 149 ISTQSPDLEPILRHGIQYFNNNTQHSSLFMLNEVKRAQRQVVAGLNFRITYSIVQTNCSK 208
Query: 124 NQHLRL-DDC 132
L L DC
Sbjct: 209 ENFLFLTPDC 218
Score = 31.2 bits (69), Expect = 0.43
Identities = 21/88 (23%), Positives = 36/88 (40%)
Query: 48 CSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKG 107
CS+ L S + + I ND + +A +++K+N+ F RIT A +
Sbjct: 10 CSRLLLSLTQESQSEEIDCNDKDLFKAVDAALKKYNSQNQSNNQFVLYRITEATKTVGSD 69
Query: 108 LKYMLEVEIGRTTCKKNQHLRLDDCDFQ 135
Y + EI C DC+++
Sbjct: 70 TFYSFKYEIKEGDCPVQSGKTWQDCEYK 97
>gi|156231037 kininogen 1 isoform 1 [Homo sapiens]
Length = 644
Score = 66.2 bits (160), Expect = 1e-11
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 54 SRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLE 113
+++ G P+ I TN P + + +++ K N N F FK + +A VQ+V G KY ++
Sbjct: 261 TKICVGCPRDIPTNSPELEETLTHTITKLNAENNATFYFKIDNVKKARVQVVAGKKYFID 320
Query: 114 VEIGRTTCKKNQHLRL-DDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRC 166
TTC K + L + C+ L Q+L C +EV+VVPW + P + C
Sbjct: 321 FVARETTCSKESNEELTESCE---TKKLGQSLDCNAEVYVVPWEKKI-YPTVNC 370
Score = 42.7 bits (99), Expect = 1e-04
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 64 IKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKK 123
I T P + R+ ++ FNN T LF + + RA Q+V GL + + I +T C K
Sbjct: 149 ISTQSPDLEPILRHGIQYFNNNTQHSSLFMLNEVKRAQRQVVAGLNFRITYSIVQTNCSK 208
Query: 124 NQHLRL-DDC 132
L L DC
Sbjct: 209 ENFLFLTPDC 218
Score = 31.2 bits (69), Expect = 0.43
Identities = 21/88 (23%), Positives = 36/88 (40%)
Query: 48 CSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKG 107
CS+ L S + + I ND + +A +++K+N+ F RIT A +
Sbjct: 10 CSRLLLSLTQESQSEEIDCNDKDLFKAVDAALKKYNSQNQSNNQFVLYRITEATKTVGSD 69
Query: 108 LKYMLEVEIGRTTCKKNQHLRLDDCDFQ 135
Y + EI C DC+++
Sbjct: 70 TFYSFKYEIKEGDCPVQSGKTWQDCEYK 97
>gi|4503105 cystatin SA precursor [Homo sapiens]
Length = 141
Score = 66.2 bits (160), Expect = 1e-11
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 67 NDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQH 126
ND V +A + + ++N T D + + R+ RA QIV G+ Y ++E+GRT C K+Q
Sbjct: 40 NDERVQRALHFVISEYNKATEDEYYRRLLRVLRAREQIVGGVNYFFDIEVGRTICTKSQP 99
Query: 127 LRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRC 166
LD C F L++ C +++ VPW + RC
Sbjct: 100 -NLDTCAFHEQPELQKKQLCSFQIYEVPWEDRMSLVNSRC 138
>gi|4503113 cystatin M precursor [Homo sapiens]
Length = 149
Score = 65.9 bits (159), Expect = 2e-11
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 29 LLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTND 88
L+AFC L L P G + + +DP V +AA+ +V +N +N
Sbjct: 14 LVAFCLLALPRDARARPQ--------ERMVGELRDLSPDDPQVQKAAQAAVASYNMGSNS 65
Query: 89 MFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQ----HLRLDDCDFQTNHTLKQTL 144
++ F+++ I +A Q+V G+KY L +E+G T C+K + H+ L C ++ L
Sbjct: 66 IYYFRDTHIIKAQSQLVAGIKYFLTMEMGSTDCRKTRVTGDHVDLTTCPLAAG-AQQEKL 124
Query: 145 SCYSEVWVVPW 155
C EV VVPW
Sbjct: 125 RCDFEVLVVPW 135
>gi|19882259 cystatin-like 1 precursor [Homo sapiens]
Length = 145
Score = 63.9 bits (154), Expect = 6e-11
Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 77 YSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQT 136
+ ++ +NN +ND +L++ R+ R+ +Q+ G++Y++ V+IG T CK+N C Q+
Sbjct: 47 FFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSN-SSCPLQS 105
Query: 137 NHTLKQTLSCYSEVWVVPWLQHFEV 161
L+++L C S ++ +PW+ +F++
Sbjct: 106 K-KLRKSLICESLIYTMPWINYFQL 129
>gi|19882256 cystatin D precursor [Homo sapiens]
Length = 142
Score = 58.9 bits (141), Expect = 2e-09
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 29 LLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTN- 87
LL L+++ G S SR G ND V A +++ ++N N
Sbjct: 9 LLLLTALMVAVAGSASAQ-------SRTLAGGIHATDLNDKSVQCALDFAISEYNKVINK 61
Query: 88 DMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQTLSCY 147
D + + ++ A QIV G+ Y V+ GRTTC K+Q LD+C F LK+ C
Sbjct: 62 DEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQP-NLDNCPFNDQPKLKEEEFCS 120
Query: 148 SEVWVVPWLQHFEVPVLRC 166
++ VPW + +C
Sbjct: 121 FQINEVPWEDKISILNYKC 139
>gi|4885163 cystatin 8 precursor [Homo sapiens]
Length = 142
Score = 58.2 bits (139), Expect = 3e-09
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 62 KTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTC 121
K + ++ V Q ++++++N + D ++F + +A +Q+ L+Y+++VEI R+ C
Sbjct: 36 KPVNASNANVKQCLWFAMQEYNKESEDKYVFLVVKTLQAQLQVTNLLEYLIDVEIARSDC 95
Query: 122 KKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRC 166
+K + C Q N LK+ LSC V +PW F V +C
Sbjct: 96 RKPLSTN-EICAIQENSKLKRKLSCSFLVGALPWNGEFTVMEKKC 139
>gi|19882249 cystatin 11 isoform 1 precursor [Homo sapiens]
Length = 138
Score = 45.1 bits (105), Expect = 3e-05
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 76 RYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQ 135
++ +++N ++D + F+ R+ + Q+ L+Y L VE+ TTC+K + +C Q
Sbjct: 49 QWITDQYNKESDDKYHFRIFRVLKVQRQVTDHLEYHLNVEMQWTTCQKPE---TTNCVPQ 105
Query: 136 TNHTLKQTLSCYSEVWVVPWLQHFEV 161
KQ ++C+ V+ VPW + +++
Sbjct: 106 ERELHKQ-VNCFFSVFAVPWFEQYKI 130
>gi|18104940 cystatin 9-like precursor [Homo sapiens]
Length = 147
Score = 43.9 bits (102), Expect = 6e-05
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 77 YSVEKFNNCTNDMFLFKESRITRALVQIVKGLK-YMLEVEIGRTTCKKNQHLRLDDCDFQ 135
++V FN + D + ++ I + + V+ + +E+ +GRT C K + +D+C FQ
Sbjct: 53 FAVHTFNQQSKDYYAYRLGHILNSWKEQVESKTVFSMELLLGRTRCGKFED-DIDNCHFQ 111
Query: 136 TNHTLKQTLSCYSEVWVVPWLQHFEV 161
+ L T +C+ + PW+ F +
Sbjct: 112 ESTELNNTFTCFFTISTRPWMTQFSL 137
>gi|58331240 fetuin B [Homo sapiens]
Length = 382
Score = 37.0 bits (84), Expect = 0.008
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 58 PGFPKTIKTNDPG--VLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVE 115
P P +I T+ VL+AA S+ K+NN N + ++TRA Q V G Y +E
Sbjct: 152 PDCPSSIPTDSSNHQVLEAATESLAKYNN-ENTSKQYSLFKVTRASSQWVVGPSYFVEYL 210
Query: 116 IGRTTCKKNQHLRLDDCDFQTNHTL 140
I + C K+Q C Q++ ++
Sbjct: 211 IKESPCTKSQ---ASSCSLQSSDSV 232
>gi|5902118 secreted phosphoprotein 2, 24kDa precursor [Homo
sapiens]
Length = 211
Score = 32.7 bits (73), Expect = 0.15
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 59 GFPKTIKTNDPGVLQ-AARYSVEKFNNCTNDMFLFKESRITRALVQIV--KGLKYMLEVE 115
GFP + DP L+ A SV K N+ + +LF+ R + V+++ L LE
Sbjct: 29 GFP--VYDYDPSSLRDALSASVVKVNSQSLSPYLFRAFRSSLKRVEVLDENNLVMNLEFS 86
Query: 116 IGRTTCKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWV 152
I TTC+K+ C FQ ++ + T C S V V
Sbjct: 87 IRETTCRKDSGEDPATCAFQRDYYV-STAVCRSTVKV 122
>gi|238624132 large conductance calcium-activated potassium channel
subfamily M alpha member 1 isoform d [Homo sapiens]
Length = 1219
Score = 31.2 bits (69), Expect = 0.43
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 5 KALHGHPQ---LPRTVPTRAAMRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFP 61
+ LH P+ LP T +RA +RA L C++LS DT QD +
Sbjct: 874 ETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNI 933
Query: 62 KTIKTNDP-GVLQA 74
K+++ +D GVLQA
Sbjct: 934 KSMQFDDSIGVLQA 947
>gi|238624130 large conductance calcium-activated potassium channel
subfamily M alpha member 1 isoform c [Homo sapiens]
Length = 1236
Score = 31.2 bits (69), Expect = 0.43
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 5 KALHGHPQ---LPRTVPTRAAMRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFP 61
+ LH P+ LP T +RA +RA L C++LS DT QD +
Sbjct: 891 ETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNI 950
Query: 62 KTIKTNDP-GVLQA 74
K+++ +D GVLQA
Sbjct: 951 KSMQFDDSIGVLQA 964
>gi|62388890 large conductance calcium-activated potassium channel
subfamily M alpha member 1 isoform a [Homo sapiens]
Length = 1182
Score = 31.2 bits (69), Expect = 0.43
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 5 KALHGHPQ---LPRTVPTRAAMRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFP 61
+ LH P+ LP T +RA +RA L C++LS DT QD +
Sbjct: 837 ETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNI 896
Query: 62 KTIKTNDP-GVLQA 74
K+++ +D GVLQA
Sbjct: 897 KSMQFDDSIGVLQA 910
>gi|26638650 large conductance calcium-activated potassium channel
subfamily M alpha member 1 isoform b [Homo sapiens]
Length = 1178
Score = 31.2 bits (69), Expect = 0.43
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 5 KALHGHPQ---LPRTVPTRAAMRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFP 61
+ LH P+ LP T +RA +RA L C++LS DT QD +
Sbjct: 833 ETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNI 892
Query: 62 KTIKTNDP-GVLQA 74
K+++ +D GVLQA
Sbjct: 893 KSMQFDDSIGVLQA 906
>gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo
sapiens]
Length = 392
Score = 30.8 bits (68), Expect = 0.56
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 81 KFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNH 138
K++ +M + ++ +A V++ LK+ L+++ + C K Q + D+C +T H
Sbjct: 121 KYDEDLEEMAIVSDTIHPQASVEVNAPLKFGLDIKSSGSGCVKVQSIEGDNCKIETEH 178
>gi|39725717 coiled-coil domain containing 141 [Homo sapiens]
Length = 875
Score = 29.3 bits (64), Expect = 1.6
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 72 LQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGL-KYMLEVEIGRTTCKKNQHLR-- 128
+QA + +EK +N T+D FL S L++++K L K++ + + T KKN L
Sbjct: 379 MQALKRKMEKVSNKTSDSFLNYPSDKVNVLLEVMKDLQKHVDDFDKVVTDYKKNLDLTEH 438
Query: 129 ----LDDCDF 134
+++C F
Sbjct: 439 FQEVIEECHF 448
>gi|63003897 transcription factor NRF [Homo sapiens]
Length = 690
Score = 28.1 bits (61), Expect = 3.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 40 TGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEK 81
+G P+P T SQ NS+ P P +T V+ +Y +EK
Sbjct: 136 SGNPAPSTTSQQANSQSTPE-PSPSQTFPESVVAEKQYFIEK 176
>gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [Homo
sapiens]
Length = 533
Score = 27.7 bits (60), Expect = 4.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 37 LSTTGGPSPDTCSQDL-NSRVKPGFPKTIKTNDPGVL 72
LST GG P CS +L +RV P ++ ++ PG+L
Sbjct: 459 LSTPGGSHPALCSLNLRGTRVTPSTVSSVISSCPGLL 495
>gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [Homo
sapiens]
Length = 539
Score = 27.7 bits (60), Expect = 4.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 37 LSTTGGPSPDTCSQDL-NSRVKPGFPKTIKTNDPGVL 72
LST GG P CS +L +RV P ++ ++ PG+L
Sbjct: 465 LSTPGGSHPALCSLNLRGTRVTPSTVSSVISSCPGLL 501
>gi|18641364 protein tyrosine phosphatase, receptor type, C isoform
3 precursor [Homo sapiens]
Length = 1256
Score = 27.3 bits (59), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 109 KYMLEVEIGRTTCKKNQH----LRLDDCDFQTNHTLK 141
+Y LEVE G T + H R+ D + T++T K
Sbjct: 467 RYHLEVEAGNTLVRNESHKNCDFRVKDLQYSTDYTFK 503
>gi|18641347 protein tyrosine phosphatase, receptor type, C isoform
1 precursor [Homo sapiens]
Length = 1304
Score = 27.3 bits (59), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 109 KYMLEVEIGRTTCKKNQH----LRLDDCDFQTNHTLK 141
+Y LEVE G T + H R+ D + T++T K
Sbjct: 515 RYHLEVEAGNTLVRNESHKNCDFRVKDLQYSTDYTFK 551
>gi|18641362 protein tyrosine phosphatase, receptor type, C isoform
2 precursor [Homo sapiens]
Length = 1143
Score = 27.3 bits (59), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 109 KYMLEVEIGRTTCKKNQH----LRLDDCDFQTNHTLK 141
+Y LEVE G T + H R+ D + T++T K
Sbjct: 354 RYHLEVEAGNTLVRNESHKNCDFRVKDLQYSTDYTFK 390
>gi|148613884 netrin 1 [Homo sapiens]
Length = 604
Score = 27.3 bits (59), Expect = 6.2
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 20 RAAMRAAGTLLAFCCLVLSTTGGP----------SPDTCSQD-------LNSRVKPGFPK 62
RA A L A CLV + GGP PD CS + + V F K
Sbjct: 3 RAVWEALAALAAVACLVGAVRGGPGLSMFAGQAAQPDPCSDENGHPRRCIPDFVNAAFGK 62
Query: 63 TIKTNDPGVLQAARYSV 79
++ + ARY V
Sbjct: 63 DVRVSSTCGRPPARYCV 79
>gi|209862887 hypothetical protein LOC81556 isoform 1 [Homo sapiens]
Length = 439
Score = 26.9 bits (58), Expect = 8.1
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 61 PKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTT 120
P ++T+ +L+ AR EK ++ +++ + + ++KG+ MLE E T
Sbjct: 330 PSGLQTDVQKILRNARKLPEKTQTFYKELNRLRKAALAFGFLDLLKGVADMLEREC--TL 387
Query: 121 CKKNQHLRLDDCDFQTNHTLKQ 142
+ H D FQ H +Q
Sbjct: 388 LPETAH---PDAAFQLTHAAQQ 406
>gi|13540586 hypothetical protein LOC81556 isoform 2 [Homo sapiens]
Length = 518
Score = 26.9 bits (58), Expect = 8.1
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 61 PKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTT 120
P ++T+ +L+ AR EK ++ +++ + + ++KG+ MLE E T
Sbjct: 409 PSGLQTDVQKILRNARKLPEKTQTFYKELNRLRKAALAFGFLDLLKGVADMLEREC--TL 466
Query: 121 CKKNQHLRLDDCDFQTNHTLKQ 142
+ H D FQ H +Q
Sbjct: 467 LPETAH---PDAAFQLTHAAQQ 485
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,959,547
Number of Sequences: 37866
Number of extensions: 297410
Number of successful extensions: 702
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 37
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.