Guide to the Human Genome
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Name: NKRF Sequence: fasta or formatted (690aa) NCBI GI: 63003897
Description:

transcription factor NRF

Referenced in:

NF-kappaB Pathway
RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         42           3
 C cysteine            1.7         12           1
 D aspartate           4.9         34           1
 E glutamate           7.4         51           2
 F phenylalanine       2.6         18           1
 G glycine             6.5         45           3
 H histidine           2.2         15           1
 I isoleucine          5.5         38           2
 K lysine              9.3         64           3
 L leucine             6.2         43           2
 M methionine          2.2         15           2
 N asparagine          4.9         34           2
 P proline             5.1         35           2
 Q glutamine           5.9         41           2
 R arginine            5.1         35           2
 S serine              7.7         53           3
 T threonine           5.9         41           2
 V valine              5.9         41           2
 W tryptophan          0.7          5           1
 Y tyrosine            4.1         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor NRF 
CDKN2AIP              0.050   CDKN2A interacting protein 
GPATCH2               0.022   G patch domain containing 2 
SFRS14                0.021   splicing factor, arginine/serine-rich 14 
SFRS14                0.021   splicing factor, arginine/serine-rich 14 
SF4                   0.017   splicing factor 4 
AGGF1                 0.016   angiogenic factor VG5Q 
CHERP                 0.015   calcium homeostasis endoplasmic reticulum protein [...
RBM5                  0.015   RNA binding motif protein 5 
GPATCH8               0.015   G patch domain containing 8 
CCDC75                0.014   coiled-coil domain containing 75 
YTHDC2                0.013   YTH domain containing 2 
RBM10                 0.012   RNA binding motif protein 10 isoform 1 
RBM10                 0.012   RNA binding motif protein 10 isoform 2 
SON                   0.012   SON DNA-binding protein isoform F 
TFIP11                0.009   tuftelin interacting protein 11 
TFIP11                0.009   tuftelin interacting protein 11 
IGHMBP2               0.009   immunoglobulin mu binding protein 2 
PINX1                 0.008   PIN2-interacting protein 1 
WDR60                 0.007   WD repeat domain 60 
EIF2AK2               0.006   eukaryotic translation initiation factor 2-alpha ki...
EIF2AK2               0.006   eukaryotic translation initiation factor 2-alpha ki...
EIF2AK2               0.006   eukaryotic translation initiation factor 2-alpha kina...
C14orf106             0.006   chromosome 14 open reading frame 106 
FTSJD2                0.006   FtsJ methyltransferase domain containing 2 
BCL9                  0.006   B-cell CLL/lymphoma 9 
FNBP4                 0.006   formin binding protein 4 
LAMA4                 0.005   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.005   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.005   laminin, alpha 4 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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