Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM185A Sequence: fasta or formatted (392aa) NCBI GI: 223671925
Description:

hypothetical protein LOC222234 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {275aa} hypothetical protein LOC222234 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         25           2
 C cysteine            2.8         11           1
 D aspartate           5.4         21           2
 E glutamate           5.4         21           2
 F phenylalanine       1.5          6           1
 G glycine             9.7         38           2
 H histidine           2.3          9           1
 I isoleucine          4.3         17           2
 K lysine              6.9         27           1
 L leucine             9.4         37           2
 M methionine          1.3          5           1
 N asparagine          2.0          8           1
 P proline             4.1         16           3
 Q glutamine           5.1         20           1
 R arginine            4.6         18           2
 S serine             10.2         40           3
 T threonine           5.1         20           1
 V valine              9.7         38           2
 W tryptophan          2.0          8           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC222234 isoform 1 
FAM185A               0.490   hypothetical protein LOC222234 isoform 2 
LOC100293942          0.009   PREDICTED: hypothetical protein 
LOC100287239          0.009   PREDICTED: hypothetical protein 
LOC100287239          0.009   PREDICTED: hypothetical protein XP_002342792 
LOC100287239          0.009   PREDICTED: hypothetical protein 
ZBED3                 0.009   zinc finger, BED-type containing 3 
LOC100290189          0.008   PREDICTED: hypothetical protein XP_002347700 
LOC100289086          0.008   PREDICTED: hypothetical protein XP_002344149 
NCOR1                 0.008   nuclear receptor co-repressor 1 
CST7                  0.008   cystatin F 
PANX2                 0.007   pannexin 2 isoform 1 
PANX2                 0.007   pannexin 2 isoform 2 
TMEM71                0.007   transmembrane protein 71 isoform 2 
SPEG                  0.007   SPEG complex locus 
CENPE                 0.007   centromere protein E 
TMEM71                0.007   transmembrane protein 71 isoform 1 
GPRC6A                0.007   G protein-coupled receptor, family C, group 6, memb...
FLNA                  0.005   filamin A, alpha isoform 2 
FLNA                  0.005   filamin A, alpha isoform 1 
GAS2L2                0.005   growth arrest-specific 2 like 2 
C1QTNF1               0.005   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               0.005   C1q and tumor necrosis factor related protein 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press