Guide to the Human Genome
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Name: C15orf44 Sequence: fasta or formatted (518aa) NCBI GI: 13540586
Description:

hypothetical protein LOC81556 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {439aa} hypothetical protein LOC81556 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         34           2
 C cysteine            1.9         10           1
 D aspartate           5.6         29           2
 E glutamate           6.8         35           2
 F phenylalanine       4.1         21           1
 G glycine             6.6         34           2
 H histidine           2.3         12           1
 I isoleucine          5.0         26           1
 K lysine              5.2         27           3
 L leucine            12.0         62           2
 M methionine          3.1         16           2
 N asparagine          4.6         24           2
 P proline             6.6         34           2
 Q glutamine           4.6         24           2
 R arginine            3.3         17           1
 S serine              6.6         34           2
 T threonine           5.6         29           1
 V valine              6.4         33           3
 W tryptophan          1.0          5           1
 Y tyrosine            2.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC81556 isoform 2 
C15orf44              0.842   hypothetical protein LOC81556 isoform 1 
LOC100293029          0.013   PREDICTED: similar to zinc finger protein 30 
LOC100290062          0.013   PREDICTED: hypothetical protein XP_002346980 
LOC100289678          0.013   PREDICTED: hypothetical protein XP_002342831 
LOC100289678          0.013   PREDICTED: similar to zinc finger protein 30 
SNX17                 0.008   sorting nexin 17 
SOX6                  0.007   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.007   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.007   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX6                  0.007   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
ZNF35                 0.007   zinc finger protein 35 
STAP2                 0.006   signal transducing adaptor family member 2 isoform 2...
STAP2                 0.006   signal transducing adaptor family member 2 isoform 1...
MCTP2                 0.005   multiple C2 domains, transmembrane 2 isoform 2 [Hom...
MCTP2                 0.005   multiple C2 domains, transmembrane 2 isoform 1 [Hom...
MCTP2                 0.005   multiple C2 domains, transmembrane 2 isoform 3 [Hom...
BAIAP2                0.005   BAI1-associated protein 2 isoform 4 
BAIAP2                0.005   BAI1-associated protein 2 isoform 3 
BAIAP2                0.005   BAI1-associated protein 2 isoform 1 
BAIAP2                0.005   BAI1-associated protein 2 isoform 2 
PRUNE2                0.005   prune homolog 2 
KIAA1109              0.005   fragile site-associated protein 
LOC100291797          0.004   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.004   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.004   PREDICTED: hypothetical protein XP_002342316 
PLCL2                 0.004   phospholipase C-like 2 isoform 1 
PLCL2                 0.004   phospholipase C-like 2 isoform 2 
CDGAP                 0.004   Cdc42 GTPase-activating protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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