Guide to the Human Genome
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Name: PTPRC Sequence: fasta or formatted (1256aa) NCBI GI: 18641364
Description:

protein tyrosine phosphatase, receptor type, C isoform 3 precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [1304aa] protein tyrosine phosphatase, receptor type, C isoform 1 precursor
alt prot [1143aa] protein tyrosine phosphatase, receptor type, C isoform 2 precursor
alt prot [34aa] protein tyrosine phosphatase, receptor type, C isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         72           2
 C cysteine            2.1         26           1
 D aspartate           5.5         69           3
 E glutamate           7.7         97           2
 F phenylalanine       3.9         49           2
 G glycine             4.4         55           1
 H histidine           3.1         39           2
 I isoleucine          5.3         66           2
 K lysine              7.0         88           2
 L leucine             7.2         91           3
 M methionine          1.7         21           1
 N asparagine          6.4         81           2
 P proline             5.7         71           2
 Q glutamine           4.5         57           2
 R arginine            3.8         48           3
 S serine              7.6         96           2
 T threonine           7.2         90           3
 V valine              6.1         77           3
 W tryptophan          1.0         13           1
 Y tyrosine            4.0         50           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, receptor type, C isofo... 
PTPRC                 0.991   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.888   protein tyrosine phosphatase, receptor type, C isofo...
PTPRA                 0.175   protein tyrosine phosphatase, receptor type, A isofo...
PTPRA                 0.175   protein tyrosine phosphatase, receptor type, A isofor...
PTPRA                 0.175   protein tyrosine phosphatase, receptor type, A isofo...
PTPRE                 0.162   protein tyrosine phosphatase, receptor type, E isofor...
PTPRE                 0.160   protein tyrosine phosphatase, receptor type, E isofo...
PTPRS                 0.146   protein tyrosine phosphatase, receptor type, sigma ...
PTPRF                 0.146   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.146   protein tyrosine phosphatase, receptor type, F isof...
PTPRS                 0.146   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.146   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.146   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.145   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.145   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.145   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.145   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.145   protein tyrosine phosphatase, receptor type, D isofo...
PTPRT                 0.130   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.130   protein tyrosine phosphatase, receptor type, T isof...
PTPRM                 0.126   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.126   protein tyrosine phosphatase, receptor type, M isof...
PTPRK                 0.122   protein tyrosine phosphatase, receptor type, K isofo...
PTPRK                 0.120   protein tyrosine phosphatase, receptor type, K isof...
PTPRZ1                0.116   protein tyrosine phosphatase, receptor-type, zeta1 p...
PTPRU                 0.115   protein tyrosine phosphatase, receptor type, U isof...
PTPRU                 0.115   protein tyrosine phosphatase, receptor type, U isof...
PTPRG                 0.114   protein tyrosine phosphatase, receptor type, G prec...
PTPRU                 0.112   protein tyrosine phosphatase, receptor type, U isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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