Guide to the Human Genome
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Name: C15orf44 Sequence: fasta or formatted (439aa) NCBI GI: 209862887
Description:

hypothetical protein LOC81556 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {518aa} hypothetical protein LOC81556 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         29           2
 C cysteine            2.3         10           1
 D aspartate           6.4         28           2
 E glutamate           6.6         29           2
 F phenylalanine       3.9         17           1
 G glycine             6.8         30           2
 H histidine           2.1          9           1
 I isoleucine          5.7         25           1
 K lysine              5.7         25           3
 L leucine            11.8         52           2
 M methionine          2.3         10           2
 N asparagine          4.8         21           2
 P proline             7.1         31           2
 Q glutamine           5.0         22           2
 R arginine            3.2         14           1
 S serine              6.2         27           2
 T threonine           5.0         22           1
 V valine              5.7         25           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC81556 isoform 1 
C15orf44              0.993   hypothetical protein LOC81556 isoform 2 
LOC100293029          0.015   PREDICTED: similar to zinc finger protein 30 
LOC100290062          0.015   PREDICTED: hypothetical protein XP_002346980 
LOC100289678          0.015   PREDICTED: hypothetical protein XP_002342831 
LOC100289678          0.015   PREDICTED: similar to zinc finger protein 30 
SNX17                 0.009   sorting nexin 17 
SOX6                  0.008   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.008   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.008   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX6                  0.008   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
ZNF35                 0.008   zinc finger protein 35 
STAP2                 0.007   signal transducing adaptor family member 2 isoform 2...
STAP2                 0.007   signal transducing adaptor family member 2 isoform 1...
MCTP2                 0.006   multiple C2 domains, transmembrane 2 isoform 2 [Hom...
MCTP2                 0.006   multiple C2 domains, transmembrane 2 isoform 1 [Hom...
MCTP2                 0.006   multiple C2 domains, transmembrane 2 isoform 3 [Hom...
BAIAP2                0.006   BAI1-associated protein 2 isoform 4 
BAIAP2                0.006   BAI1-associated protein 2 isoform 3 
BAIAP2                0.006   BAI1-associated protein 2 isoform 1 
BAIAP2                0.006   BAI1-associated protein 2 isoform 2 
PRUNE2                0.006   prune homolog 2 
KIAA1109              0.006   fragile site-associated protein 
PLCL2                 0.005   phospholipase C-like 2 isoform 1 
PLCL2                 0.005   phospholipase C-like 2 isoform 2 
CDGAP                 0.005   Cdc42 GTPase-activating protein 
TRIML2                0.005   tripartite motif family-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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