Guide to the Human Genome
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Name: KCNMA1 Sequence: fasta or formatted (1178aa) NCBI GI: 26638650
Description:

large conductance calcium-activated potassium channel subfamily M alpha member 1 isoform b

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [1236aa] large conductance calcium-activated potassium channel subfamily M...
alt prot [1219aa] large conductance calcium-activated potassium channel subfamily M...
alt prot [1182aa] large conductance calcium-activated potassium channel subfamily M...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         74           2
 C cysteine            2.5         29           2
 D aspartate           5.4         64           5
 E glutamate           4.7         55           2
 F phenylalanine       5.1         60           2
 G glycine             6.5         76           8
 H histidine           2.5         29           1
 I isoleucine          6.4         75           2
 K lysine              5.1         60           3
 L leucine            10.7        126           2
 M methionine          2.7         32           1
 N asparagine          5.4         64           2
 P proline             3.8         45           2
 Q glutamine           3.3         39           1
 R arginine            4.2         49           1
 S serine             10.2        120          22
 T threonine           4.8         57           2
 V valine              6.2         73           3
 W tryptophan          1.4         17           2
 Y tyrosine            2.9         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   large conductance calcium-activated potassium channe... 
KCNMA1                0.991   large conductance calcium-activated potassium chann...
KCNMA1                0.991   large conductance calcium-activated potassium channe...
KCNMA1                0.959   large conductance calcium-activated potassium chann...
KCNU1                 0.368   potassium channel, subfamily U, member 1 
KCNT2                 0.042   potassium channel, subfamily T, member 2 
KCNT1                 0.040   potassium channel, subfamily T, member 1 
KCNB2                 0.017   potassium voltage-gated channel, Shab-related subfam...
KCNF1                 0.017   potassium voltage-gated channel, subfamily F, member...
KCNB1                 0.016   potassium voltage-gated channel, Shab-related subfami...
DACH1                 0.016   dachshund homolog 1 isoform b 
DACH1                 0.016   dachshund homolog 1 isoform a 
DACH1                 0.016   dachshund homolog 1 isoform c 
KCNC4                 0.014   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.014   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.014   Shaw-related voltage-gated potassium channel protein...
KCNG4                 0.014   potassium voltage-gated channel, subfamily G, member...
KCND3                 0.014   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.014   potassium voltage-gated channel, Shal-related subfam...
KCND2                 0.013   potassium voltage-gated channel, Shal-related subfami...
KCNC2                 0.013   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.013   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.013   Shaw-related voltage-gated potassium channel protein...
KCNG1                 0.013   potassium voltage-gated channel, subfamily G, member...
KCNC3                 0.013   Shaw-related voltage-gated potassium channel protein...
KCNC1                 0.012   Shaw-related voltage-gated potassium channel protein ...
KCNC1                 0.012   Shaw-related voltage-gated potassium channel protei...
KCNV1                 0.012   potassium channel, subfamily V, member 1 
KCND1                 0.012   potassium voltage-gated channel, Shal-related subfam...
KCNS2                 0.011   potassium voltage-gated channel, delayed-rectifier, ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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