| Name: TRIM40 | Sequence: fasta or formatted (229aa) | NCBI GI: 20162564 | |
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Description: tripartite motif-containing 40
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Referenced in:
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 6.1 14 2 C cysteine 6.1 14 2 D aspartate 2.6 6 1 E glutamate 10.0 23 2 F phenylalanine 1.3 3 1 G glycine 3.5 8 1 H histidine 3.5 8 2 I isoleucine 3.9 9 1 K lysine 7.0 16 2 L leucine 14.8 34 3 M methionine 1.3 3 1 N asparagine 3.5 8 1 P proline 4.8 11 2 Q glutamine 7.4 17 2 R arginine 7.0 16 2 S serine 6.1 14 1 T threonine 3.5 8 1 V valine 5.7 13 1 W tryptophan 0.4 1 1 Y tyrosine 1.3 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 tripartite motif-containing 40 TRIM10 0.170 tripartite motif-containing 10 isoform 1 TRIM10 0.170 tripartite motif-containing 10 isoform 2 TRIM6 0.156 tripartite motif-containing 6 isoform 2 TRIM6 0.156 tripartite motif-containing 6 isoform 1 TRIM4 0.156 tripartite motif protein TRIM4 isoform beta TRIM6-TRIM34 0.156 tripartite motif-containing 6 and tripartite motif-c... TRIM15 0.147 tripartite motif protein 15 TRIM38 0.147 tripartite motif-containing 38 TRIM75 0.145 tripartite motif-containing 75 TRIM17 0.141 tripartite motif-containing 17 isoform 3 TRIM17 0.141 tripartite motif-containing 17 isoform 1 TRIM17 0.141 tripartite motif-containing 17 isoform 1 TRIM58 0.141 tripartite motif-containing 58 TRIM39 0.138 tripartite motif-containing 39 isoform 2 TRIM39 0.138 tripartite motif-containing 39 isoform 1 TRIM31 0.136 tripartite motif protein 31 TRIM68 0.134 ring finger protein 137 TRIM34 0.132 tripartite motif protein 34 isoform 3 TRIM34 0.132 tripartite motif protein 34 isoform 1 TRIM34 0.132 tripartite motif protein 34 isoform 1 TRIM4 0.129 tripartite motif protein TRIM4 isoform alpha TRIM5 0.113 tripartite motif protein TRIM5 isoform alpha TRIM5 0.113 tripartite motif protein TRIM5 isoform delta TRIM5 0.113 tripartite motif protein TRIM5 isoform gamma TRIM22 0.111 tripartite motif-containing 22 TRIM43 0.109 tripartite motif-containing 43 TRIM27 0.109 ret finger protein TRIM72 0.109 tripartite motif-containing 72 LOC653192 0.107 PREDICTED: Tripartite motif-containing protein 43-li...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
