Guide to the Human Genome
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Name: TRIM15 Sequence: fasta or formatted (465aa) NCBI GI: 149193331
Description:

tripartite motif protein 15

Referenced in:

Tripartite Motif Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         29           1
 C cysteine            3.9         18           1
 D aspartate           4.5         21           1
 E glutamate           9.9         46           3
 F phenylalanine       4.1         19           2
 G glycine             6.7         31           3
 H histidine           2.6         12           2
 I isoleucine          3.7         17           2
 K lysine              4.9         23           2
 L leucine            11.2         52           3
 M methionine          1.7          8           2
 N asparagine          0.9          4           1
 P proline             5.8         27           1
 Q glutamine           6.7         31           2
 R arginine            6.2         29           2
 S serine              6.5         30           2
 T threonine           5.6         26           1
 V valine              6.7         31           2
 W tryptophan          1.1          5           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif protein 15 
TRIM10                0.393   tripartite motif-containing 10 isoform 1 
TRIM26                0.278   tripartite motif-containing 26 
TRIM10                0.275   tripartite motif-containing 10 isoform 2 
TRIM7                 0.250   tripartite motif-containing 7 isoform 1 
TRIM27                0.243   ret finger protein 
TRIM39                0.243   tripartite motif-containing 39 isoform 2 
TRIM39                0.227   tripartite motif-containing 39 isoform 1 
TRIM38                0.214   tripartite motif-containing 38 
TRIM11                0.198   tripartite motif-containing 11 
TRIM75                0.195   tripartite motif-containing 75 
TRIM58                0.195   tripartite motif-containing 58 
TRIM21                0.194   tripartite motif protein 21 
MEFV                  0.191   Mediterranean fever protein 
TRIM41                0.189   tripartite motif-containing 41 isoform 1 
TRIM68                0.185   ring finger protein 137 
TRIM7                 0.174   tripartite motif-containing 7 isoform 2 
TRIM7                 0.170   tripartite motif-containing 7 isoform 3 
TRIM7                 0.170   tripartite motif-containing 7 isoform 3 
TRIM7                 0.170   tripartite motif-containing 7 isoform 3 
TRIM60                0.161   ring finger protein 129 
TRIM6                 0.160   tripartite motif-containing 6 isoform 2 
TRIM6                 0.160   tripartite motif-containing 6 isoform 1 
TRIM17                0.148   tripartite motif-containing 17 isoform 1 
TRIM17                0.148   tripartite motif-containing 17 isoform 1 
TRIM69                0.148   tripartite motif-containing 69 isoform a 
TRIM4                 0.143   tripartite motif protein TRIM4 isoform beta 
TRIM41                0.140   tripartite motif-containing 41 isoform 2 
TRIM62                0.138   tripartite motif-containing 62 
TRIM17                0.137   tripartite motif-containing 17 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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