Guide to the Human Genome
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Name: TRIM34 Sequence: fasta or formatted (488aa) NCBI GI: 18087807
Description:

tripartite motif protein 34 isoform 1

Referenced in:

Interferon
Tripartite Motif Family

Other entries for this name:
alt prot [270aa] tripartite motif protein 34 isoform 3
alt prot [243aa] tripartite motif protein 34 isoform 2
alt mRNA [488aa] tripartite motif protein 34 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         17           1
 C cysteine            4.7         23           2
 D aspartate           3.5         17           1
 E glutamate           9.6         47           4
 F phenylalanine       3.5         17           2
 G glycine             3.7         18           2
 H histidine           2.5         12           2
 I isoleucine          3.7         18           1
 K lysine              7.8         38           2
 L leucine            10.9         53           3
 M methionine          2.3         11           1
 N asparagine          3.7         18           2
 P proline             3.9         19           2
 Q glutamine           5.3         26           2
 R arginine            5.5         27           2
 S serine              8.0         39           2
 T threonine           4.1         20           1
 V valine              8.0         39           2
 W tryptophan          2.3         11           1
 Y tyrosine            3.7         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif protein 34 isoform 1 
TRIM34                1.000   tripartite motif protein 34 isoform 1 
TRIM6-TRIM34          1.000   tripartite motif-containing 6 and tripartite motif-c...
TRIM22                0.602   tripartite motif-containing 22 
TRIM6                 0.546   tripartite motif-containing 6 isoform 2 
TRIM6                 0.546   tripartite motif-containing 6 isoform 1 
TRIM5                 0.519   tripartite motif protein TRIM5 isoform alpha 
TRIM34                0.507   tripartite motif protein 34 isoform 3 
TRIM34                0.501   tripartite motif protein 34 isoform 2 
TRIM21                0.351   tripartite motif protein 21 
TRIM5                 0.346   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.346   tripartite motif protein TRIM5 isoform gamma 
TRIM68                0.275   ring finger protein 137 
TRIM58                0.250   tripartite motif-containing 58 
TRIM11                0.244   tripartite motif-containing 11 
TRIM38                0.235   tripartite motif-containing 38 
TRIM60                0.217   ring finger protein 129 
TRIM39                0.214   tripartite motif-containing 39 isoform 2 
TRIM27                0.213   ret finger protein 
TRIM39                0.205   tripartite motif-containing 39 isoform 1 
TRIM17                0.185   tripartite motif-containing 17 isoform 1 
TRIM17                0.185   tripartite motif-containing 17 isoform 1 
TRIM4                 0.171   tripartite motif protein TRIM4 isoform beta 
TRIM75                0.170   tripartite motif-containing 75 
TRIML1                0.169   tripartite motif family-like 1 
LOC642446             0.168   PREDICTED: tripartite motif-containing protein 64B-...
TRIM64                0.166   tripartite motif-containing 64 
LOC646754             0.164   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.164   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.164   PREDICTED: tripartite motif-containing protein 64C-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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