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Search of human proteins with 19923790
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923790 rab3 GTPase-activating protein, non-catalytic
subunit [Homo sapiens]
(1393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923790 rab3 GTPase-activating protein, non-catalytic subuni... 2792 0.0
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 37 0.13
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 36 0.29
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 36 0.29
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 36 0.29
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 35 0.66
gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa... 35 0.66
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 35 0.66
gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo sa... 35 0.66
gi|71061468 centromere protein E [Homo sapiens] 33 1.5
gi|112734867 retinitis pigmentosa GTPase regulator interacting p... 33 1.9
gi|40807445 protein regulator of cytokinesis 1 isoform 3 [Homo s... 33 1.9
gi|40807443 protein regulator of cytokinesis 1 isoform 2 [Homo s... 33 1.9
gi|4506039 protein regulator of cytokinesis 1 isoform 1 [Homo sa... 33 1.9
gi|73695475 protein BAP28 [Homo sapiens] 33 1.9
gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo ... 33 2.5
gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo ... 33 2.5
gi|231573214 zinc finger protein 294 [Homo sapiens] 32 3.3
gi|58197558 tudor domain containing 6 [Homo sapiens] 32 3.3
gi|9910266 kinesin family member 15 [Homo sapiens] 32 3.3
gi|189083737 peroxisome biogenesis factor 26 [Homo sapiens] 31 7.3
gi|8923625 peroxisome biogenesis factor 26 [Homo sapiens] 31 7.3
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 31 7.3
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 31 7.3
gi|148664197 coiled-coil domain containing 40 [Homo sapiens] 31 7.3
gi|42544233 leucine rich repeat neuronal 2 [Homo sapiens] 31 7.3
gi|42544231 leucine rich repeat neuronal 2 [Homo sapiens] 31 7.3
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 31 9.5
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa... 31 9.5
gi|40538788 neuroligin 4, Y-linked [Homo sapiens] 31 9.5
>gi|19923790 rab3 GTPase-activating protein, non-catalytic subunit
[Homo sapiens]
Length = 1393
Score = 2792 bits (7237), Expect = 0.0
Identities = 1393/1393 (100%), Positives = 1393/1393 (100%)
Query: 1 MACSIVQFCYFQDLQAARDFLFPHLREEILSGALRRDPSKSTDWEDDGWGAWEENEPQEP 60
MACSIVQFCYFQDLQAARDFLFPHLREEILSGALRRDPSKSTDWEDDGWGAWEENEPQEP
Sbjct: 1 MACSIVQFCYFQDLQAARDFLFPHLREEILSGALRRDPSKSTDWEDDGWGAWEENEPQEP 60
Query: 61 EEEGNTCKTQKTSWLQDCVLSLSPTNDLMVIAREQKAVFLVPKWKYSDKGKEEMQFAVGW 120
EEEGNTCKTQKTSWLQDCVLSLSPTNDLMVIAREQKAVFLVPKWKYSDKGKEEMQFAVGW
Sbjct: 61 EEEGNTCKTQKTSWLQDCVLSLSPTNDLMVIAREQKAVFLVPKWKYSDKGKEEMQFAVGW 120
Query: 121 SGSLNVEEGECVTSALCIPLASQKRSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLL 180
SGSLNVEEGECVTSALCIPLASQKRSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLL
Sbjct: 121 SGSLNVEEGECVTSALCIPLASQKRSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLL 180
Query: 181 NEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAA 240
NEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAA
Sbjct: 181 NEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAA 240
Query: 241 SGNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPA 300
SGNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPA
Sbjct: 241 SGNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPA 300
Query: 301 MSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNAASGWLGWKSKHEEEA 360
MSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNAASGWLGWKSKHEEEA
Sbjct: 301 MSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNAASGWLGWKSKHEEEA 360
Query: 361 VQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIR 420
VQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIR
Sbjct: 361 VQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIR 420
Query: 421 MWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWST 480
MWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWST
Sbjct: 421 MWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWST 480
Query: 481 QQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFH 540
QQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFH
Sbjct: 481 QQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFH 540
Query: 541 LALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILA 600
LALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILA
Sbjct: 541 LALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILA 600
Query: 601 SERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLD 660
SERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLD
Sbjct: 601 SERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLD 660
Query: 661 TPFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYE 720
TPFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYE
Sbjct: 661 TPFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYE 720
Query: 721 KDVLNIKKISEEEYVALGSFFFWKCLHGESSTEDMCHTLESAGLSPQLLLSLLLSVWLSK 780
KDVLNIKKISEEEYVALGSFFFWKCLHGESSTEDMCHTLESAGLSPQLLLSLLLSVWLSK
Sbjct: 721 KDVLNIKKISEEEYVALGSFFFWKCLHGESSTEDMCHTLESAGLSPQLLLSLLLSVWLSK 780
Query: 781 EKDILDKPQSICCLHTMLSLLSKMKVAIDETWDSQSVSPWWQQMRTACIQSENNGAALLS 840
EKDILDKPQSICCLHTMLSLLSKMKVAIDETWDSQSVSPWWQQMRTACIQSENNGAALLS
Sbjct: 781 EKDILDKPQSICCLHTMLSLLSKMKVAIDETWDSQSVSPWWQQMRTACIQSENNGAALLS 840
Query: 841 AHVGHSVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLILQ 900
AHVGHSVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLILQ
Sbjct: 841 AHVGHSVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLILQ 900
Query: 901 TLLHSKGNTQTSKVSSLQAEPLPRLSVKKLLEGGKGGIADSVAKWIFKQDFSPEVLKLAN 960
TLLHSKGNTQTSKVSSLQAEPLPRLSVKKLLEGGKGGIADSVAKWIFKQDFSPEVLKLAN
Sbjct: 901 TLLHSKGNTQTSKVSSLQAEPLPRLSVKKLLEGGKGGIADSVAKWIFKQDFSPEVLKLAN 960
Query: 961 EERDAENPDEPKEGVNRSFLEVSEMEMDLGAIPDLLHLAYEQFPCSLELDVLHAHCCWEY 1020
EERDAENPDEPKEGVNRSFLEVSEMEMDLGAIPDLLHLAYEQFPCSLELDVLHAHCCWEY
Sbjct: 961 EERDAENPDEPKEGVNRSFLEVSEMEMDLGAIPDLLHLAYEQFPCSLELDVLHAHCCWEY 1020
Query: 1021 VVQWNKDPEEARFFVRSIEHLKQIFNAHVQNGIALMMWNTFLVKRFSAATYLMDKVGKSP 1080
VVQWNKDPEEARFFVRSIEHLKQIFNAHVQNGIALMMWNTFLVKRFSAATYLMDKVGKSP
Sbjct: 1021 VVQWNKDPEEARFFVRSIEHLKQIFNAHVQNGIALMMWNTFLVKRFSAATYLMDKVGKSP 1080
Query: 1081 KDRLCRRDVGMSDTAMTSFLGSCLDLLQILMEADVSRDEIQVPVLDTEDAWLSVEGPISI 1140
KDRLCRRDVGMSDTAMTSFLGSCLDLLQILMEADVSRDEIQVPVLDTEDAWLSVEGPISI
Sbjct: 1081 KDRLCRRDVGMSDTAMTSFLGSCLDLLQILMEADVSRDEIQVPVLDTEDAWLSVEGPISI 1140
Query: 1141 VELALEQKHIHYPLVEHHSILCSILYAVMRFSLKTVKPLSLFDSKGKNAFFKDLTSIQLL 1200
VELALEQKHIHYPLVEHHSILCSILYAVMRFSLKTVKPLSLFDSKGKNAFFKDLTSIQLL
Sbjct: 1141 VELALEQKHIHYPLVEHHSILCSILYAVMRFSLKTVKPLSLFDSKGKNAFFKDLTSIQLL 1200
Query: 1201 PSGEMDPNFISVRQQFLLKVVSAAVQAQHSATKVKDPTEEATPTPFGKDQDWPALAVDLA 1260
PSGEMDPNFISVRQQFLLKVVSAAVQAQHSATKVKDPTEEATPTPFGKDQDWPALAVDLA
Sbjct: 1201 PSGEMDPNFISVRQQFLLKVVSAAVQAQHSATKVKDPTEEATPTPFGKDQDWPALAVDLA 1260
Query: 1261 HHLQVSEDVVRRHYVGELYNYGVDHLGEEAILQVHDKEVLASQLLVLTGQRLAHALLHTQ 1320
HHLQVSEDVVRRHYVGELYNYGVDHLGEEAILQVHDKEVLASQLLVLTGQRLAHALLHTQ
Sbjct: 1261 HHLQVSEDVVRRHYVGELYNYGVDHLGEEAILQVHDKEVLASQLLVLTGQRLAHALLHTQ 1320
Query: 1321 TKEGMELLARLPPTLCTWLKAMDPQDLQNTEVPIATTAKLVNKVIELLPEKHGQYGLALH 1380
TKEGMELLARLPPTLCTWLKAMDPQDLQNTEVPIATTAKLVNKVIELLPEKHGQYGLALH
Sbjct: 1321 TKEGMELLARLPPTLCTWLKAMDPQDLQNTEVPIATTAKLVNKVIELLPEKHGQYGLALH 1380
Query: 1381 LIEAVEAISLPSL 1393
LIEAVEAISLPSL
Sbjct: 1381 LIEAVEAISLPSL 1393
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 37.0 bits (84), Expect = 0.13
Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 36/209 (17%)
Query: 541 LALSDKKSERAKDMHLVKKLAALLKTKSPNL-------DLVETEIKELILDIKYPATKKQ 593
+ L K+E K + VK+L L + L +++ETE++ ++K + Q
Sbjct: 1025 MILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQ 1084
Query: 594 ALESILASERLP----FSCLRNITQTLMDTL-----KSQELESVDEGLLQFCANKLKLLQ 644
L +L +L ++ ++++T L + K QEL +D+ L K + +
Sbjct: 1085 ELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQAL------KERNWE 1138
Query: 645 LYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDK 704
L + +Q+ HLD ++ + E++++KL+ LEK + E N +
Sbjct: 1139 LKQRAAQVT----HLDMTIREHRGEM-----EQKIIKLEGTLEKSELELKECNKQIESLN 1189
Query: 705 DGVLPVKTFLEYLEY-----EKDVLNIKK 728
D + K L E+ E+++ +KK
Sbjct: 1190 DKLQNAKEQLREKEFIMLQNEQEISQLKK 1218
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4
[Homo sapiens]
Length = 3321
Score = 35.8 bits (81), Expect = 0.29
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 21/144 (14%)
Query: 575 ETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKSQELESVDEGLLQ 634
+T ++ +LD + A +ALE+ + I Q D S +L ++ E + +
Sbjct: 1868 QTSLQAGVLDYETFAKSLEALEAWIVEAE-------EILQG-QDPSHSSDLSTIQERMEE 1919
Query: 635 FCANKLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQALLEKYKQENT 694
LK + + +LN L + L L++KE+ ++Q L + ++
Sbjct: 1920 LKGQMLKFSSMAPDLDRLNELGYRLP-------------LNDKEIKRMQNLNRHWSLISS 1966
Query: 695 RTNVRFSDDKDGVLPVKTFLEYLE 718
+T RFS + +L +TFLE E
Sbjct: 1967 QTTERFSKLQSFLLQHQTFLEKCE 1990
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 35.8 bits (81), Expect = 0.29
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 21/144 (14%)
Query: 575 ETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKSQELESVDEGLLQ 634
+T ++ +LD + A +ALE+ + I Q D S +L ++ E + +
Sbjct: 7273 QTSLQAGVLDYETFAKSLEALEAWIVEAE-------EILQG-QDPSHSSDLSTIQERMEE 7324
Query: 635 FCANKLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQALLEKYKQENT 694
LK + + +LN L + L L++KE+ ++Q L + ++
Sbjct: 7325 LKGQMLKFSSMAPDLDRLNELGYRLP-------------LNDKEIKRMQNLNRHWSLISS 7371
Query: 695 RTNVRFSDDKDGVLPVKTFLEYLE 718
+T RFS + +L +TFLE E
Sbjct: 7372 QTTERFSKLQSFLLQHQTFLEKCE 7395
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 35.8 bits (81), Expect = 0.29
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 21/144 (14%)
Query: 575 ETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKSQELESVDEGLLQ 634
+T ++ +LD + A +ALE+ + I Q D S +L ++ E + +
Sbjct: 7344 QTSLQAGVLDYETFAKSLEALEAWIVEAE-------EILQG-QDPSHSSDLSTIQERMEE 7395
Query: 635 FCANKLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQALLEKYKQENT 694
LK + + +LN L + L L++KE+ ++Q L + ++
Sbjct: 7396 LKGQMLKFSSMAPDLDRLNELGYRLP-------------LNDKEIKRMQNLNRHWSLISS 7442
Query: 695 RTNVRFSDDKDGVLPVKTFLEYLE 718
+T RFS + +L +TFLE E
Sbjct: 7443 QTTERFSKLQSFLLQHQTFLEKCE 7466
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 34.7 bits (78), Expect = 0.66
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)
Query: 518 QTYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMHLVKK---LAALLKTKSPNLDLV 574
+T + C V ++ ++ HL +K+ A + + + +LK DL+
Sbjct: 454 KTLEECRVTLEGLKMENGSLKSHLQGEKQKATEASAVEQTAESCEVQEMLKVARAEKDLL 513
Query: 575 ETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKSQEL---ESVDEG 631
E EL ++ + + + S+LA +S L+ I + L L E E
Sbjct: 514 ELSCNELRQELLKANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASES 573
Query: 632 LLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQ-ALLEKYK 690
+ K + +L + V Q ++ H + S+ + +++ ++K L+ Q L K
Sbjct: 574 DAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESSVIKLEEQKSDLERQLKTLTKQM 633
Query: 691 QENTRTNVRFSDDKDGVLPVKTFLEYLEYEKDVLNIK-KISEEE 733
+E T RF D + V ++ E ++++ +K K+ EEE
Sbjct: 634 KEETEEWRRFQADLQTAVVVANDIK-CEAQQELRTVKRKLLEEE 676
>gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo
sapiens]
Length = 709
Score = 34.7 bits (78), Expect = 0.66
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)
Query: 518 QTYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMHLVKK---LAALLKTKSPNLDLV 574
+T + C V ++ ++ HL +K+ A + + + +LK DL+
Sbjct: 454 KTLEECRVTLEGLKMENGSLKSHLQGEKQKATEASAVEQTAESCEVQEMLKVARAEKDLL 513
Query: 575 ETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKSQEL---ESVDEG 631
E EL ++ + + + S+LA +S L+ I + L L E E
Sbjct: 514 ELSCNELRQELLKANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASES 573
Query: 632 LLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQ-ALLEKYK 690
+ K + +L + V Q ++ H + S+ + +++ ++K L+ Q L K
Sbjct: 574 DAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESSVIKLEEQKSDLERQLKTLTKQM 633
Query: 691 QENTRTNVRFSDDKDGVLPVKTFLEYLEYEKDVLNIK-KISEEE 733
+E T RF D + V ++ E ++++ +K K+ EEE
Sbjct: 634 KEETEEWRRFQADLQTAVVVANDIK-CEAQQELRTVKRKLLEEE 676
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 34.7 bits (78), Expect = 0.66
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)
Query: 518 QTYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMHLVKK---LAALLKTKSPNLDLV 574
+T + C V ++ ++ HL +K+ A + + + +LK DL+
Sbjct: 535 KTLEECRVTLEGLKMENGSLKSHLQGEKQKATEASAVEQTAESCEVQEMLKVARAEKDLL 594
Query: 575 ETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKSQEL---ESVDEG 631
E EL ++ + + + S+LA +S L+ I + L L E E
Sbjct: 595 ELSCNELRQELLKANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASES 654
Query: 632 LLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQ-ALLEKYK 690
+ K + +L + V Q ++ H + S+ + +++ ++K L+ Q L K
Sbjct: 655 DAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESSVIKLEEQKSDLERQLKTLTKQM 714
Query: 691 QENTRTNVRFSDDKDGVLPVKTFLEYLEYEKDVLNIK-KISEEE 733
+E T RF D + V ++ E ++++ +K K+ EEE
Sbjct: 715 KEETEEWRRFQADLQTAVVVANDIK-CEAQQELRTVKRKLLEEE 757
>gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo
sapiens]
Length = 790
Score = 34.7 bits (78), Expect = 0.66
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)
Query: 518 QTYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMHLVKK---LAALLKTKSPNLDLV 574
+T + C V ++ ++ HL +K+ A + + + +LK DL+
Sbjct: 535 KTLEECRVTLEGLKMENGSLKSHLQGEKQKATEASAVEQTAESCEVQEMLKVARAEKDLL 594
Query: 575 ETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKSQEL---ESVDEG 631
E EL ++ + + + S+LA +S L+ I + L L E E
Sbjct: 595 ELSCNELRQELLKANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASES 654
Query: 632 LLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQ-ALLEKYK 690
+ K + +L + V Q ++ H + S+ + +++ ++K L+ Q L K
Sbjct: 655 DAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESSVIKLEEQKSDLERQLKTLTKQM 714
Query: 691 QENTRTNVRFSDDKDGVLPVKTFLEYLEYEKDVLNIK-KISEEE 733
+E T RF D + V ++ E ++++ +K K+ EEE
Sbjct: 715 KEETEEWRRFQADLQTAVVVANDIK-CEAQQELRTVKRKLLEEE 757
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 33.5 bits (75), Expect = 1.5
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 18/130 (13%)
Query: 588 PATK---KQALESILASER-------LPFSCLRNITQTLMDTLKSQELESVDE-GLLQFC 636
PATK ++ +ES L S R L + LR + + LK +E +DE L+
Sbjct: 486 PATKLLNQENIESELNSLRADYDNLVLDYEQLRTEKEEM--ELKLKEKNDLDEFEALERK 543
Query: 637 ANKLKLLQLYESVSQLNSLDFHLDTPFSD--NDLAL---LLRLDEKELLKLQALLEKYKQ 691
K + +QL +S L +L H + D N+L+ LLR E ++ KLQ ++ K
Sbjct: 544 TKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQKL 603
Query: 692 ENTRTNVRFS 701
EN + ++ +S
Sbjct: 604 ENIKMDLSYS 613
>gi|112734867 retinitis pigmentosa GTPase regulator interacting
protein 1 [Homo sapiens]
Length = 1286
Score = 33.1 bits (74), Expect = 1.9
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 540 HLALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESIL 599
H AL + +E ++ K A LK++ ++ +++ +KE ++ +E +
Sbjct: 319 HEALLKQVNELRAELKEESKKAVSLKSQLEDVSILQMTLKEF----------QERVEDLE 368
Query: 600 ASERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHL 659
R + D L L+S D +N+L QL + VSQL L
Sbjct: 369 KE--------RKLLNDNYDKLLESMLDSSDSSSQPHWSNELIAEQLQQQVSQLQD---QL 417
Query: 660 DTPFSDNDLALLLRLDEK---ELLKLQA--LLEKYKQE 692
D D LL EK E LKL+ +L+K+KQE
Sbjct: 418 DAELEDKRKVLLELSREKAQNEDLKLEVTNILQKHKQE 455
>gi|40807445 protein regulator of cytokinesis 1 isoform 3 [Homo
sapiens]
Length = 566
Score = 33.1 bits (74), Expect = 1.9
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 556 LVKKLAALLKTKSPNLDLVE---TEIKELILDIKYPATKKQALESILASERLPFSCLRNI 612
L K L L KS N + E T+I+EL ++ P +++A+ +I++ + +
Sbjct: 218 LQKLLRQLEMQKSQNEAVCEGLRTQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQL 277
Query: 613 TQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYES--VSQLNSLDFHLDTPFSDNDLA- 669
++ LK Q ++ V E + +++L+Q ++ SQ F PF D
Sbjct: 278 EVDRLEELKMQNMKKVIEAI------RVELVQYWDQCFYSQEQRQAF---APFCAEDYTE 328
Query: 670 LLLRLDEKELLKLQALLEKYKQ 691
LL+L + E+++L+ E +K+
Sbjct: 329 SLLQLHDAEIVRLKNYYEVHKE 350
>gi|40807443 protein regulator of cytokinesis 1 isoform 2 [Homo
sapiens]
Length = 606
Score = 33.1 bits (74), Expect = 1.9
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 556 LVKKLAALLKTKSPNLDLVE---TEIKELILDIKYPATKKQALESILASERLPFSCLRNI 612
L K L L KS N + E T+I+EL ++ P +++A+ +I++ + +
Sbjct: 218 LQKLLRQLEMQKSQNEAVCEGLRTQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQL 277
Query: 613 TQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYES--VSQLNSLDFHLDTPFSDNDLA- 669
++ LK Q ++ V E + +++L+Q ++ SQ F PF D
Sbjct: 278 EVDRLEELKMQNMKKVIEAI------RVELVQYWDQCFYSQEQRQAF---APFCAEDYTE 328
Query: 670 LLLRLDEKELLKLQALLEKYKQ 691
LL+L + E+++L+ E +K+
Sbjct: 329 SLLQLHDAEIVRLKNYYEVHKE 350
>gi|4506039 protein regulator of cytokinesis 1 isoform 1 [Homo
sapiens]
Length = 620
Score = 33.1 bits (74), Expect = 1.9
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 556 LVKKLAALLKTKSPNLDLVE---TEIKELILDIKYPATKKQALESILASERLPFSCLRNI 612
L K L L KS N + E T+I+EL ++ P +++A+ +I++ + +
Sbjct: 218 LQKLLRQLEMQKSQNEAVCEGLRTQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQL 277
Query: 613 TQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYES--VSQLNSLDFHLDTPFSDNDLA- 669
++ LK Q ++ V E + +++L+Q ++ SQ F PF D
Sbjct: 278 EVDRLEELKMQNMKKVIEAI------RVELVQYWDQCFYSQEQRQAF---APFCAEDYTE 328
Query: 670 LLLRLDEKELLKLQALLEKYKQ 691
LL+L + E+++L+ E +K+
Sbjct: 329 SLLQLHDAEIVRLKNYYEVHKE 350
>gi|73695475 protein BAP28 [Homo sapiens]
Length = 2144
Score = 33.1 bits (74), Expect = 1.9
Identities = 71/339 (20%), Positives = 132/339 (38%), Gaps = 80/339 (23%)
Query: 531 SVKTVNVPFHLALSDKKSER------------AKDMHLVKKLAALLKTKSPNLDLVETEI 578
+++ + PF A+SD+K ++ K+ H + ++++ K S N + V E+
Sbjct: 1106 ALEKITKPFFAAISDEKVQQKLLRMLFDLLVNCKNSHCAQTVSSVFKGISVNAEQVRIEL 1165
Query: 579 KELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCAN 638
+ P K + L ++ R M KSQ+LESV E +
Sbjct: 1166 E--------PPDKAKPLGTVQQKRRQK-----------MQQKKSQDLESVQEVGGSYWQR 1206
Query: 639 KLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQALLEKYKQ--ENTRT 696
+L+L + +L S + T F+ LL + L + Q +E KQ +
Sbjct: 1207 VTLILELLQHKKKLRSPQILVPTLFN------LLSRCLEPLPQEQGNMEYTKQLILSCLL 1260
Query: 697 NVRFSDDKDGVLPVKTFLEYLEYEKDVLNIKKISEEEYVALGSFFFWKCLHGESSTEDMC 756
N+ DG + KD+L+ +K + E V +C+ +
Sbjct: 1261 NICQKLSPDGG----------KIPKDILDEEKFNVELIV--------QCIRLSEMPQTHH 1302
Query: 757 HTLESAGLSPQLLLSLLLSVWLSKEKDILDKPQSICCLHTMLSLLSKM---KVAIDETWD 813
H L LLL + ++ K LH ++S+ + M + +D+T+
Sbjct: 1303 HAL--------LLLGTVAGIFPDK------------VLHNIMSIFTFMGANVMRLDDTYS 1342
Query: 814 SQSVSPWWQQMRTACIQSENNGAALLSAHVGHSVAAQIS 852
Q ++ + + A IQS++ + +S +V V IS
Sbjct: 1343 FQVINKTVKMVIPALIQSDSGDSIEVSRNVEEIVVKIIS 1381
>gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo
sapiens]
Length = 2155
Score = 32.7 bits (73), Expect = 2.5
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 744 KCLHGESSTEDMCHTLESAGLSPQLLLSLLLS--VWLSK-EKD----ILDKPQSICCLHT 796
K L + + D L S L Q ++ L S WL K EK+ I +KP++ +
Sbjct: 1281 KMLTAQDMSYDEARNLHSKWLKHQAFMAELASNKEWLDKIEKEGMQLISEKPETEAVVKE 1340
Query: 797 MLSLLSKMKVAIDETWDSQSVSPW-----------------WQQMRTACIQSENNGAALL 839
L+ L KM ++ T +++ + W + IQS++ G L
Sbjct: 1341 KLTGLHKMWEVLESTTQTKAQRLFDANKAELFTQSCADLDKWLHGLESQIQSDDYGKDLT 1400
Query: 840 SAHVGHSVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLIL 899
S ++ + N M +K L + ++AL S E S D K L Q + +L
Sbjct: 1401 SVNILLKKQQMLENQMEVRKKEIEELQSQAQAL--SQEGKSTDEVDSKRLTVQTKFMELL 1458
Query: 900 QTLLHSKGNTQTSK 913
+ L K N SK
Sbjct: 1459 EPLNERKHNLLASK 1472
>gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo
sapiens]
Length = 2364
Score = 32.7 bits (73), Expect = 2.5
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 744 KCLHGESSTEDMCHTLESAGLSPQLLLSLLLS--VWLSK-EKD----ILDKPQSICCLHT 796
K L + + D L S L Q ++ L S WL K EK+ I +KP++ +
Sbjct: 1294 KMLTAQDMSYDEARNLHSKWLKHQAFMAELASNKEWLDKIEKEGMQLISEKPETEAVVKE 1353
Query: 797 MLSLLSKMKVAIDETWDSQSVSPW-----------------WQQMRTACIQSENNGAALL 839
L+ L KM ++ T +++ + W + IQS++ G L
Sbjct: 1354 KLTGLHKMWEVLESTTQTKAQRLFDANKAELFTQSCADLDKWLHGLESQIQSDDYGKDLT 1413
Query: 840 SAHVGHSVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLIL 899
S ++ + N M +K L + ++AL S E S D K L Q + +L
Sbjct: 1414 SVNILLKKQQMLENQMEVRKKEIEELQSQAQAL--SQEGKSTDEVDSKRLTVQTKFMELL 1471
Query: 900 QTLLHSKGNTQTSK 913
+ L K N SK
Sbjct: 1472 EPLNERKHNLLASK 1485
>gi|231573214 zinc finger protein 294 [Homo sapiens]
Length = 1812
Score = 32.3 bits (72), Expect = 3.3
Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 15/167 (8%)
Query: 568 SPNLDLVETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKSQELES 627
+P LD + + L+ + TK +LES F CLR I Q L +E+E
Sbjct: 422 NPKLDFFKNFLTSLVAGLSTERTKTSSLESSAVISAF-FECLRFIMQ---QNLGEEEIEQ 477
Query: 628 --VDEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKELLKLQAL 685
V++ L+ F LK + Q L HL S + DEK L+ +
Sbjct: 478 MLVNDQLIPFIDAVLK-----DPGLQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENV 532
Query: 686 LEKYKQENTRTNV-RFSD---DKDGVLPVKTFLEYLEYEKDVLNIKK 728
L + + + V + S+ D + VL V L+ L+ K L K
Sbjct: 533 LIHFWERLSEICVAKISEPEADVESVLGVSNLLQVLQKPKSSLKSSK 579
>gi|58197558 tudor domain containing 6 [Homo sapiens]
Length = 2096
Score = 32.3 bits (72), Expect = 3.3
Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 601 SERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLD 660
+E + C +++++ L ++E+ ++E + K L+L +S+++ N + + D
Sbjct: 1184 NENMKLPCTEYLSKSVGYKLPNKEI--LEESYKPQINSSYKELKLLQSLTKTNLVTQYQD 1241
Query: 661 TPFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEY 716
+ + N L ++KE + + L+ + E T + + D D LP+K F E+
Sbjct: 1242 SVGNKNSQVFPLTTEKKEEISAETPLKTARVEATLSERKIGDSCDKDLPLK-FCEF 1296
>gi|9910266 kinesin family member 15 [Homo sapiens]
Length = 1388
Score = 32.3 bits (72), Expect = 3.3
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 548 SERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILASERLPFS 607
++RAK L+K A + + N+ ++ E+K L K+ L + + + P S
Sbjct: 357 AQRAK---LIKNKAVVNEDTQGNVSQLQAEVKRL----------KEQLAELASGQTPPES 403
Query: 608 CLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDND 667
L D K+ +E E +L F ++ + L E V+QL L + N
Sbjct: 404 FLTR------DKKKTNYMEYFQEAMLFFKKSEQEKKSLIEKVTQLEDLTLKKEKFIQSN- 456
Query: 668 LALLLRLDEKELLKLQAL 685
++++ E ++++L+ L
Sbjct: 457 -KMIVKFREDQIIRLEKL 473
>gi|189083737 peroxisome biogenesis factor 26 [Homo sapiens]
Length = 305
Score = 31.2 bits (69), Expect = 7.3
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 845 HSVAAQISNNMTEKKFSQTVLGADSEALTDSW-EALSLDTEYW----KLLLKQLEDCLIL 899
H+VA + + E K S V+G + A D W E LS +Y+ KL K LE C++L
Sbjct: 68 HAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILL 127
Query: 900 QTLLHSKG 907
+ + G
Sbjct: 128 YSKMQEPG 135
>gi|8923625 peroxisome biogenesis factor 26 [Homo sapiens]
Length = 305
Score = 31.2 bits (69), Expect = 7.3
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 845 HSVAAQISNNMTEKKFSQTVLGADSEALTDSW-EALSLDTEYW----KLLLKQLEDCLIL 899
H+VA + + E K S V+G + A D W E LS +Y+ KL K LE C++L
Sbjct: 68 HAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILL 127
Query: 900 QTLLHSKG 907
+ + G
Sbjct: 128 YSKMQEPG 135
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 31.2 bits (69), Expect = 7.3
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 606 FSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSD 665
++CL + L D+ QELE + L+ +L L ++ + ++ S F D F
Sbjct: 868 YACLLKVKDDLEDSKNKQELEY--KSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVA 925
Query: 666 NDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYEKDVLN 725
L + + EK+ +L LE K+E + R SD + + + +L ++V +
Sbjct: 926 ETLE-MGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFL--NEEVKS 982
Query: 726 IKKISEEEYVAL 737
+K+ E+E V+L
Sbjct: 983 LKQ--EKEQVSL 992
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 31.2 bits (69), Expect = 7.3
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 606 FSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSD 665
++CL + L D+ QELE + L+ +L L ++ + ++ S F D F
Sbjct: 868 YACLLKVKDDLEDSKNKQELEY--KSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVA 925
Query: 666 NDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYEKDVLN 725
L + + EK+ +L LE K+E + R SD + + + +L ++V +
Sbjct: 926 ETLE-MGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFL--NEEVKS 982
Query: 726 IKKISEEEYVAL 737
+K+ E+E V+L
Sbjct: 983 LKQ--EKEQVSL 992
>gi|148664197 coiled-coil domain containing 40 [Homo sapiens]
Length = 1142
Score = 31.2 bits (69), Expect = 7.3
Identities = 37/194 (19%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 507 LNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMHL-VKKLAALLK 565
+N + + S + + L++ G + +N +S+ E + L +K+L+ L+
Sbjct: 705 VNELITNSQSEISRRTILIERKQGLINFLNKQLERMVSELGGEEVGPLELEIKRLSKLID 764
Query: 566 TKSPNLDLVETEIKELILD---IKYPATKKQALESILASER----LPFSCLRNITQTLMD 618
V+ ++ L L +K +++ L S+ AS++ + LR ++ +
Sbjct: 765 EHDGKA--VQAQVTWLRLQQEMVKVTQEQEEQLASLDASKKELHIMEQKKLRVESKIEQE 822
Query: 619 TLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDNDLALLLRLDEKE 678
+ +E+E + L N LK L + + ++ +S + + ++N+ L+ E+E
Sbjct: 823 KKEQKEIEHHMKDL----DNDLKKLNMLMNKNRCSSEELEQNNRVTENEFVRSLKASERE 878
Query: 679 LLKLQALLEKYKQE 692
+K+Q L + +E
Sbjct: 879 TIKMQDKLNQLSEE 892
>gi|42544233 leucine rich repeat neuronal 2 [Homo sapiens]
Length = 713
Score = 31.2 bits (69), Expect = 7.3
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 613 TQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFH-----LDTPFSDND 667
TQTL+ L+S + VD+ L + AN +L S S DFH L +N
Sbjct: 71 TQTLL--LQSNSIVRVDQSELGYLANLTELDLSQNSFSDARDCDFHALPQLLSLHLEENQ 128
Query: 668 LALLLRLDEKELLKLQALLEKYKQEN 693
L RL++ L +L E Y N
Sbjct: 129 LT---RLEDHSFAGLASLQELYLNHN 151
>gi|42544231 leucine rich repeat neuronal 2 [Homo sapiens]
Length = 713
Score = 31.2 bits (69), Expect = 7.3
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 613 TQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFH-----LDTPFSDND 667
TQTL+ L+S + VD+ L + AN +L S S DFH L +N
Sbjct: 71 TQTLL--LQSNSIVRVDQSELGYLANLTELDLSQNSFSDARDCDFHALPQLLSLHLEENQ 128
Query: 668 LALLLRLDEKELLKLQALLEKYKQEN 693
L RL++ L +L E Y N
Sbjct: 129 LT---RLEDHSFAGLASLQELYLNHN 151
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 30.8 bits (68), Expect = 9.5
Identities = 38/197 (19%), Positives = 82/197 (41%), Gaps = 24/197 (12%)
Query: 542 ALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILAS 601
+L ++ E ++ +K+ L KT+ L + +K+ L+++ + A I+
Sbjct: 564 SLGNELKESQLEIIQLKEKERLAKTEQETLLQIIETVKDEKLNLETTLQESTAARQIMER 623
Query: 602 ERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLDT 661
E + NI QT T + L+ + + K L ++ + L+ + T
Sbjct: 624 E------IENI-QTYQSTAEENFLQEIKNAKSEASIYKNSLSEIGKECEMLSKMVMETKT 676
Query: 662 PFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYEK 721
DN + L+ L+K+ QEN + S + + ++ ++ +E E+
Sbjct: 677 ---DNQI-------------LKEELKKHSQENIKFENSISRLTEDKILLENYVRSIENER 720
Query: 722 DVLNIK-KISEEEYVAL 737
D L + + + EY++L
Sbjct: 721 DTLEFEMRHLQREYLSL 737
>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
sapiens]
Length = 833
Score = 30.8 bits (68), Expect = 9.5
Identities = 38/197 (19%), Positives = 82/197 (41%), Gaps = 24/197 (12%)
Query: 542 ALSDKKSERAKDMHLVKKLAALLKTKSPNLDLVETEIKELILDIKYPATKKQALESILAS 601
+L ++ E ++ +K+ L KT+ L + +K+ L+++ + A I+
Sbjct: 601 SLGNELKESQLEIIQLKEKERLAKTEQETLLQIIETVKDEKLNLETTLQESTAARQIMER 660
Query: 602 ERLPFSCLRNITQTLMDTLKSQELESVDEGLLQFCANKLKLLQLYESVSQLNSLDFHLDT 661
E + NI QT T + L+ + + K L ++ + L+ + T
Sbjct: 661 E------IENI-QTYQSTAEENFLQEIKNAKSEASIYKNSLSEIGKECEMLSKMVMETKT 713
Query: 662 PFSDNDLALLLRLDEKELLKLQALLEKYKQENTRTNVRFSDDKDGVLPVKTFLEYLEYEK 721
DN + L+ L+K+ QEN + S + + ++ ++ +E E+
Sbjct: 714 ---DNQI-------------LKEELKKHSQENIKFENSISRLTEDKILLENYVRSIENER 757
Query: 722 DVLNIK-KISEEEYVAL 737
D L + + + EY++L
Sbjct: 758 DTLEFEMRHLQREYLSL 774
>gi|40538788 neuroligin 4, Y-linked [Homo sapiens]
Length = 816
Score = 30.8 bits (68), Expect = 9.5
Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 17/205 (8%)
Query: 416 GIAIRMWKGYRDAQIG-WIQTVEDLHERVPEKADFSPFGNSQGPSRVAQFLVIYAPRRGI 474
G+ R+ YR ++ W++ V LH + E + P + F Y RR
Sbjct: 573 GLKPRVRDHYRATKVAFWLELVPHLHN-LNEIFQYVSTTTKVPPPDMTSFP--YGTRRSP 629
Query: 475 LEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKT 534
++W T + P + N KH + P V ++ + + ++ + V S+
Sbjct: 630 AKIWPTTKRPAITPANNPKHSK--DPHKTGPEDTTVLIETKRDYSTELSVTIAVGASLLF 687
Query: 535 VNVPFHLALSDKKSERAKDMH---LVKKLAALLKTKSPNLDLVETEIKELILDIKYPATK 591
+N+ AL KK +R + H ++ T N +++ ++K+L D
Sbjct: 688 LNILAFAALYYKKDKRRHETHRHPSPQRNTTNDITHIQNEEIMSLQMKQLEHD------- 740
Query: 592 KQALESILASERLPFSCLRNITQTL 616
ES+ A + L +C + T TL
Sbjct: 741 -HECESLQAHDTLRLTCPPDYTLTL 764
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,587,085
Number of Sequences: 37866
Number of extensions: 2323627
Number of successful extensions: 6207
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 6178
Number of HSP's gapped (non-prelim): 63
length of query: 1393
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1278
effective length of database: 13,892,928
effective search space: 17755161984
effective search space used: 17755161984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.