SYNE1 5535

Name: SYNE1	Sequence: fasta or formatted (3321aa)		NCBI GI: 154277118
Description: spectrin repeat containing, nuclear envelope 1 isoform 4		Referenced in: Spectrin and Plectin Families
Other entries for this name: alt prot [8797aa] spectrin repeat containing, nuclear envelope 1 isoform 1 alt prot [982aa] spectrin repeat containing, nuclear envelope 1 isoform 3 alt prot [8749aa] spectrin repeat containing, nuclear envelope 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 215 2 C cysteine 1.4 47 1 D aspartate 5.5 183 2 E glutamate 10.7 355 4 F phenylalanine 1.9 64 2 G glycine 3.6 120 2 H histidine 2.4 80 2 I isoleucine 4.7 156 3 K lysine 6.7 224 3 L leucine 14.0 466 6 M methionine 2.3 77 2 N asparagine 3.3 109 2 P proline 2.3 77 3 Q glutamine 9.2 304 3 R arginine 5.1 168 2 S serine 8.9 295 3 T threonine 4.2 138 2 V valine 4.1 137 2 W tryptophan 1.6 52 1 Y tyrosine 1.6 54 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 spectrin repeat containing, nuclear envelope 1 isof... SYNE1 1.000 spectrin repeat containing, nuclear envelope 1 isof... SYNE1 0.998 spectrin repeat containing, nuclear envelope 1 isofo... SYNE2 0.299 spectrin repeat containing, nuclear envelope 2 isof... SYNE2 0.299 spectrin repeat containing, nuclear envelope 2 isof... SYNE1 0.289 spectrin repeat containing, nuclear envelope 1 isof... SYNE2 0.048 spectrin repeat containing, nuclear envelope 2 isofo... SYNE2 0.044 spectrin repeat containing, nuclear envelope 2 isofo... MACF1 0.038 microfilament and actin filament cross-linker protei... MACF1 0.038 microfilament and actin filament cross-linker protei... DST 0.037 dystonin isoform 4 DST 0.037 dystonin isoform 3 DST 0.037 dystonin isoform 2 DST 0.037 dystonin isoform 1 DST 0.037 dystonin isoform 1eA precursor DMD 0.029 dystrophin Dp427c isoform DMD 0.029 dystrophin Dp427p2 isoform DMD 0.029 dystrophin Dp427p1 isoform DMD 0.029 dystrophin Dp427l isoform DMD 0.029 dystrophin Dp427m isoform SPTAN1 0.022 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... SPTAN1 0.022 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... DMD 0.021 dystrophin Dp260-2 isoform DMD 0.021 dystrophin Dp260-1 isoform GOLGB1 0.019 golgi autoantigen, golgin subfamily b, macrogolgin ... SPTA1 0.019 spectrin, alpha, erythrocytic 1 UTRN 0.019 utrophin CEP250 0.017 centrosomal protein 2 SPTBN5 0.016 spectrin, beta, non-erythrocytic 5 GOLGA4 0.016 golgi autoantigen, golgin subfamily a, 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.