Guide to the Human Genome
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Name: SYNE1 Sequence: fasta or formatted (8749aa) NCBI GI: 23097308
Description:

spectrin repeat containing, nuclear envelope 1 isoform 2

Referenced in:

Spectrin and Plectin Families

Other entries for this name:
alt prot [8797aa] spectrin repeat containing, nuclear envelope 1 isoform 1
alt prot [3321aa] spectrin repeat containing, nuclear envelope 1 isoform 4
alt prot [982aa] spectrin repeat containing, nuclear envelope 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5        568           3
 C cysteine            1.3        117           2
 D aspartate           5.3        463           2
 E glutamate          11.0        965           4
 F phenylalanine       2.3        205           2
 G glycine             3.3        291           2
 H histidine           2.7        234           2
 I isoleucine          4.5        391           3
 K lysine              7.9        693           3
 L leucine            13.0       1139           6
 M methionine          2.3        204           2
 N asparagine          3.3        289           2
 P proline             2.0        177           3
 Q glutamine           8.6        756           3
 R arginine            4.8        421           2
 S serine              8.3        727           3
 T threonine           4.7        410           2
 V valine              4.9        427           2
 W tryptophan          1.5        130           1
 Y tyrosine            1.6        142           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spectrin repeat containing, nuclear envelope 1 isofo... 
SYNE1                 0.989   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.378   spectrin repeat containing, nuclear envelope 1 isof...
SYNE2                 0.121   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.119   spectrin repeat containing, nuclear envelope 2 isof...
SYNE1                 0.113   spectrin repeat containing, nuclear envelope 1 isof...
SYNE2                 0.020   spectrin repeat containing, nuclear envelope 2 isofo...
MACF1                 0.019   microfilament and actin filament cross-linker protei...
DST                   0.018   dystonin isoform 4 
DST                   0.018   dystonin isoform 3 
DST                   0.018   dystonin isoform 2 
DST                   0.018   dystonin isoform 1 
DST                   0.018   dystonin isoform 1eA precursor 
MACF1                 0.018   microfilament and actin filament cross-linker protei...
DMD                   0.017   dystrophin Dp427c isoform 
SYNE2                 0.017   spectrin repeat containing, nuclear envelope 2 isofo...
DMD                   0.017   dystrophin Dp427p1 isoform 
DMD                   0.016   dystrophin Dp427m isoform 
UTRN                  0.016   utrophin 
C14orf49              0.015   nesprin-3 
PLEC1                 0.014   plectin 1 isoform 3 
PLEC1                 0.014   plectin 1 isoform 1 
PLEC1                 0.014   plectin 1 isoform 2 
PLEC1                 0.014   plectin 1 isoform 8 
PLEC1                 0.014   plectin 1 isoform 7 
PLEC1                 0.014   plectin 1 isoform 11 
PLEC1                 0.014   plectin 1 isoform 10 
PLEC1                 0.014   plectin 1 isoform 6 
CLMN                  0.014   calmin 
SPTBN1                0.012   spectrin, beta, non-erythrocytic 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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