Guide to the Human Genome
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Name: NLGN4Y Sequence: fasta or formatted (816aa) NCBI GI: 40538788
Description:

neuroligin 4, Y-linked

Referenced in:

Gene Families
Neurons
Y-linked Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         44           2
 C cysteine            1.3         11           1
 D aspartate           6.0         49           2
 E glutamate           4.7         38           2
 F phenylalanine       4.2         34           1
 G glycine             6.1         50           2
 H histidine           3.4         28           2
 I isoleucine          5.8         47           2
 K lysine              4.7         38           2
 L leucine             9.1         74           2
 M methionine          2.9         24           1
 N asparagine          5.1         42           2
 P proline             7.2         59           3
 Q glutamine           4.4         36           2
 R arginine            3.6         29           2
 S serine              5.8         47           2
 T threonine           8.7         71           3
 V valine              5.8         47           2
 W tryptophan          1.6         13           1
 Y tyrosine            4.3         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuroligin 4, Y-linked 
NLGN4X                0.977   X-linked neuroligin 4 
NLGN4X                0.977   X-linked neuroligin 4 
NLGN3                 0.711   neuroligin 3 
NLGN1                 0.704   neuroligin 1 
NLGN2                 0.593   neuroligin 2 
BCHE                  0.178   butyrylcholinesterase precursor 
ACHE                  0.172   acetylcholinesterase isoform E4-E5 precursor 
ACHE                  0.171   acetylcholinesterase isoform E4-E6 precursor 
CES2                  0.157   carboxylesterase 2 isoform 1 
CES1                  0.156   carboxylesterase 1 isoform c precursor 
CES7                  0.156   carboxylesterase 7 isoform 1 
CES1                  0.156   carboxylesterase 1 isoform a precursor 
CES1                  0.156   carboxylesterase 1 isoform b precursor 
CEL                   0.153   carboxyl ester lipase precursor 
CES3                  0.153   carboxylesterase 3 
CES2                  0.149   carboxylesterase 2 isoform 2 
CES7                  0.127   carboxylesterase 7 isoform 2 
CES8                  0.121   carboxylesterase 8 (putative) 
TG                    0.098   thyroglobulin 
LOC649264             0.075   PREDICTED: similar to hCG40360 
LOC649264             0.075   PREDICTED: similar to hCG40360 
LOC649264             0.038   PREDICTED: similar to hCG40360 
DPP9                  0.007   dipeptidylpeptidase 9 
CHST6                 0.005   carbohydrate (N-acetylglucosamine 6-O) sulfotransfer...
LRRC4B                0.004   leucine rich repeat containing 4B 
MUC2                  0.004   mucin 2 precursor 
ALK                   0.004   anaplastic lymphoma kinase 
RAB3GAP2              0.004   rab3 GTPase-activating protein, non-catalytic subuni...
PRG4                  0.003   proteoglycan 4 isoform D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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