Guide to the Human Genome
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Name: RAB3GAP2 Sequence: fasta or formatted (1393aa) NCBI GI: 19923790
Description:

rab3 GTPase-activating protein, non-catalytic subunit

Referenced in:

Rab
Small RNAs in RNA Processing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4        103           3
 C cysteine            2.0         28           2
 D aspartate           5.5         77           2
 E glutamate           7.4        103           3
 F phenylalanine       3.6         50           3
 G glycine             5.0         69           2
 H histidine           2.6         36           2
 I isoleucine          4.3         60           2
 K lysine              6.5         90           2
 L leucine            13.2        184           3
 M methionine          1.9         27           2
 N asparagine          3.3         46           2
 P proline             4.8         67           3
 Q glutamine           5.2         73           2
 R arginine            3.4         48           2
 S serine              8.0        111           2
 T threonine           5.0         69           2
 V valine              6.7         94           2
 W tryptophan          2.0         28           2
 Y tyrosine            2.2         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rab3 GTPase-activating protein, non-catalytic subuni... 
CCDC18                0.004   sarcoma antigen NY-SAR-41 
SYNE1                 0.004   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.004   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.004   spectrin repeat containing, nuclear envelope 1 isof...
CYTSB                 0.004   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.004   spectrin domain with coiled-coils 1 NSP5a3a 
CYTSB                 0.004   spectrin domain with coiled-coils 1 NSP5b3b 
CYTSB                 0.004   spectrin domain with coiled-coils 1 NSP5b3a 
CENPE                 0.003   centromere protein E 
RPGRIP1               0.003   retinitis pigmentosa GTPase regulator interacting p...
PRC1                  0.003   protein regulator of cytokinesis 1 isoform 3 
PRC1                  0.003   protein regulator of cytokinesis 1 isoform 2 
PRC1                  0.003   protein regulator of cytokinesis 1 isoform 1 
HEATR1                0.003   protein BAP28 
SPTBN1                0.003   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.003   spectrin, beta, non-erythrocytic 1 isoform 1 
RNF160                0.003   zinc finger protein 294 
TDRD6                 0.003   tudor domain containing 6 
KIF15                 0.003   kinesin family member 15 
PEX26                 0.002   peroxisome biogenesis factor 26 
PEX26                 0.002   peroxisome biogenesis factor 26 
AKAP9                 0.002   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.002   A-kinase anchor protein 9 isoform 3 
CCDC40                0.002   coiled-coil domain containing 40 
LRRN2                 0.002   leucine rich repeat neuronal 2 
LRRN2                 0.002   leucine rich repeat neuronal 2 
CCDC110               0.002   coiled-coil domain containing 110 isoform b 
CCDC110               0.002   coiled-coil domain containing 110 isoform a 
NLGN4Y                0.002   neuroligin 4, Y-linked 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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