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Search of human proteins with 19923268
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923268 protein-kinase, interferon-inducible double
stranded RNA dependent inhibitor, repressor of (P58 repressor) [Homo
sapiens]
(761 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923268 protein-kinase, interferon-inducible double stranded... 1536 0.0
gi|113205089 zinc finger, MYM domain containing 1 [Homo sapiens] 145 1e-34
gi|13899259 THAP domain containing, apoptosis associated protein... 66 1e-10
gi|194440668 THAP domain containing 5 isoform 1 [Homo sapiens] 52 3e-06
gi|56788351 THAP domain containing 7 isoform 2 [Homo sapiens] 49 2e-05
gi|56788349 THAP domain containing 7 isoform 1 [Homo sapiens] 49 2e-05
gi|31982895 THAP domain containing 4 [Homo sapiens] 46 1e-04
gi|46195755 SCAN domain containing 3 [Homo sapiens] 46 1e-04
gi|21389507 THAP domain containing 6 [Homo sapiens] 44 7e-04
gi|40354197 THAP domain containing 11 [Homo sapiens] 43 0.001
gi|22749337 THAP domain containing 8 [Homo sapiens] 42 0.002
gi|8922446 THAP domain containing, apoptosis associated protein ... 40 0.008
gi|94536788 THAP domain containing 9 [Homo sapiens] 40 0.011
gi|15149465 caldesmon 1 isoform 5 [Homo sapiens] 39 0.023
gi|15149463 caldesmon 1 isoform 4 [Homo sapiens] 39 0.023
gi|15149467 caldesmon 1 isoform 3 [Homo sapiens] 39 0.023
gi|4826657 caldesmon 1 isoform 2 [Homo sapiens] 39 0.023
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 39 0.023
gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Ho... 38 0.031
gi|67782362 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Homo sapi... 38 0.040
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 37 0.068
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 36 0.12
gi|28460688 taxilin [Homo sapiens] 36 0.15
gi|8923271 coiled-coil domain containing 49 [Homo sapiens] 36 0.15
gi|197276647 leucine rich repeat (in FLII) interacting protein 2... 35 0.20
gi|5453726 leucine rich repeat (in FLII) interacting protein 2 i... 35 0.20
gi|124249396 coiled-coil domain containing 30 [Homo sapiens] 35 0.26
gi|15559209 interleukin 33 [Homo sapiens] 35 0.34
gi|149773449 zinc finger protein 862 [Homo sapiens] 35 0.34
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 34 0.44
>gi|19923268 protein-kinase, interferon-inducible double stranded
RNA dependent inhibitor, repressor of (P58 repressor)
[Homo sapiens]
Length = 761
Score = 1536 bits (3978), Expect = 0.0
Identities = 761/761 (100%), Positives = 761/761 (100%)
Query: 1 MPNFCAAPNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAK 60
MPNFCAAPNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAK
Sbjct: 1 MPNFCAAPNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAK 60
Query: 61 HFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKID 120
HFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKID
Sbjct: 61 HFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKID 120
Query: 121 ETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEEKENKEYLKSLFEILILMGKQN 180
ETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEEKENKEYLKSLFEILILMGKQN
Sbjct: 121 ETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEEKENKEYLKSLFEILILMGKQN 180
Query: 181 IPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRKRFETTAVNTLFCSKTQQRQMLE 240
IPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRKRFETTAVNTLFCSKTQQRQMLE
Sbjct: 181 IPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRKRFETTAVNTLFCSKTQQRQMLE 240
Query: 241 ICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFIGFLPYE 300
ICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFIGFLPYE
Sbjct: 241 ICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFIGFLPYE 300
Query: 301 ADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAIYTLCS 360
ADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAIYTLCS
Sbjct: 301 ADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAIYTLCS 360
Query: 361 SCALNMWLAKSVPVMGVSVALGTIEEVCSFFHRSPQLLLELDNVISVLFQNSKERGKELK 420
SCALNMWLAKSVPVMGVSVALGTIEEVCSFFHRSPQLLLELDNVISVLFQNSKERGKELK
Sbjct: 361 SCALNMWLAKSVPVMGVSVALGTIEEVCSFFHRSPQLLLELDNVISVLFQNSKERGKELK 420
Query: 421 EICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFI 480
EICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFI
Sbjct: 421 EICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFI 480
Query: 481 VTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEAT 540
VTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEAT
Sbjct: 481 VTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEAT 540
Query: 541 NLATKLDIQMKLPGKFRRAHQGNLESQLTSESYYKETLSVPTVEHIIQELKDIFSEQHLK 600
NLATKLDIQMKLPGKFRRAHQGNLESQLTSESYYKETLSVPTVEHIIQELKDIFSEQHLK
Sbjct: 541 NLATKLDIQMKLPGKFRRAHQGNLESQLTSESYYKETLSVPTVEHIIQELKDIFSEQHLK 600
Query: 601 ALKCLSLVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKWKHRGKDIELPS 660
ALKCLSLVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKWKHRGKDIELPS
Sbjct: 601 ALKCLSLVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKWKHRGKDIELPS 660
Query: 661 TIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRSSNL 720
TIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRSSNL
Sbjct: 661 TIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRSSNL 720
Query: 721 ALLNINFDIKHDLDLMVDTYIKLYTSKSELPTDNSETVENT 761
ALLNINFDIKHDLDLMVDTYIKLYTSKSELPTDNSETVENT
Sbjct: 721 ALLNINFDIKHDLDLMVDTYIKLYTSKSELPTDNSETVENT 761
>gi|113205089 zinc finger, MYM domain containing 1 [Homo sapiens]
Length = 1142
Score = 145 bits (366), Expect = 1e-34
Identities = 154/616 (25%), Positives = 276/616 (44%), Gaps = 54/616 (8%)
Query: 146 EGQDEDILPLTLEEKE-NKEYLKSLFEILILMGKQNIPLDGHE--ADEIPEGLFTPDNFQ 202
+G D L + ++ E NK+YLK + E ++ +GKQ +PL G++ + +G NF
Sbjct: 533 DGAVSDDLSIHSKQIEGNKKYLKLIIENILFLGKQCLPLRGNDQSVSSVNKG-----NFL 587
Query: 203 ALLECRI-NSGEEVLRKRFETTAVNTLFCSKTQ-QRQMLEICESCIREETLREVRDSHFF 260
LLE R + GEE R + V+ F + TQ Q ++EI ++ + ++ + E+ DS F
Sbjct: 588 ELLEMRAKDKGEETFR--LMNSQVD--FYNSTQIQSDIIEIIKTEMLQDIVNEINDSSAF 643
Query: 261 SIITDDVVDIAGEEHLPVLVRFVDESHN---LREEFIGFLPYEADAEILAVKFHTMIT-- 315
SII D+ ++ A +E L + VR+ +S ++E F+GF+ E E+ H I
Sbjct: 644 SIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGFVDTE---EMTGTHLHRTIKTY 700
Query: 316 -EKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAIYTLCSSCALNMWLAKSVP- 373
++ G++M+ GQAY ++ K +A+ ++ P+A+Y C + L++ + +
Sbjct: 701 LQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRALYIHCYAHFLDLSIIRFCKE 760
Query: 374 VMGVSVALGTIEEVCSFFHRSPQLLLELDNVISVLFQNSKERGKELKEICHSQWTGRHDA 433
V + AL T+ + + S ++L N+ L QN + K I S WT
Sbjct: 761 VKELRSALKTLSSLFNTICMSGEMLANFRNIYR-LSQNKTCK----KHISQSCWTVHDRT 815
Query: 434 FEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFIVTIVVLKNVLSFT 493
+++ L ++ L+ I S ++ N A L + VS F+F+ + L VLS T
Sbjct: 816 LLSVIDSLPEIIETLEVIASHSS---NTSFADELSHLLTLVSKFEFVFCLKFLYRVLSVT 872
Query: 494 RAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEATNLATK-------- 545
K LQ +T D+F + + A+L L+ E +VY + ++ + K
Sbjct: 873 GILSKELQNKTIDIFSLSSKIEAILECLSS--ERNDVYFKTIWDGTEEICQKITCKGFKV 930
Query: 546 ----LDIQMKLPGKFRRAHQGNLESQLTSESYYKETLSVPTVEHIIQELKDIFSEQHLKA 601
L + K+ + N+ ++E YK + ++ I+Q LK FSE
Sbjct: 931 EKPSLQKRRKIQKSVDLGNSDNMFFPTSTEEQYKINIYYQGLDTILQNLKLCFSEFDYCK 990
Query: 602 LKCLSLVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKWKHRGKDIELPST 661
+K +S + + T+ +H + Y+ D L H ++ + I S
Sbjct: 991 IKQISELLFKWNEPLNETTAKHVQEFYKLDEDIIPELRFYRHYAKLNFVIDDSCINFVSL 1050
Query: 662 ----IYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRS 717
I LH P + LL + P+ E + RLK YL NT+ ++
Sbjct: 1051 GCLFIQHGLH----SNIPCLSKLLYIALSWPITSASTENSFSTLPRLKTYLCNTMGQEKL 1106
Query: 718 SNLALLNINFDIKHDL 733
+ AL+ + ++ + L
Sbjct: 1107 TGPALMAVEQELVNKL 1122
>gi|13899259 THAP domain containing, apoptosis associated protein 2
[Homo sapiens]
Length = 228
Score = 65.9 bits (159), Expect = 1e-10
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 1 MPNFCAAPNC-TRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCA 59
MP CAA C T + +++F RFP DP R ++WV RR + KH LC+
Sbjct: 1 MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVRRKNFVP------GKHTFLCS 54
Query: 60 KHFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKE 105
KHFE S T R L+ +A+PTIFD +H+ + + R +K+
Sbjct: 55 KHFEASCFDLTGQTRR-LKMDAVPTIFDFCTHIKSMKLKSRNLLKK 99
>gi|194440668 THAP domain containing 5 isoform 1 [Homo sapiens]
Length = 395
Score = 51.6 bits (122), Expect = 3e-06
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 1 MPNFCAAPNCT----RKSTQSDLAFFRFP-RDPARCQKWVENCRRADLEDKTPDQLNKHY 55
MP +CAA C R + L+F+ FP D R +KW++N +R + P +K+
Sbjct: 1 MPRYCAAICCKNRRGRNNKDRKLSFYPFPLHDKERLEKWLKNMKR---DSWVP---SKYQ 54
Query: 56 RLCAKHFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLK 115
LC+ HF + R L+ A+PTIF L +K K+ EDE
Sbjct: 55 FLCSDHFTPDSLDIRWGIR-YLKQTAVPTIFSLPEDNQGKDPSKKKSQKKNLEDEKEVCP 113
Query: 116 QKKIDETSEQEQKHKETNNSNAQNPSEE 143
+ K +E+ + K N++ + E
Sbjct: 114 KAKSEESFVLNETKKNIVNTDVPHQHPE 141
>gi|56788351 THAP domain containing 7 isoform 2 [Homo sapiens]
Length = 309
Score = 48.9 bits (115), Expect = 2e-05
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 1 MPNFCAAPNC----TRKSTQSDLAFFRFPR-DPARCQKWVENCRRADLEDKTP-DQLNKH 54
MP C+A C TR++ ++F R P+ D R W+ NC+R D + D +++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60
Query: 55 YRLCAKHFETSM--ICRTSPYRTVLRDNAIPTIFDLTSHL 92
C+KHFE + S Y L++ A+PTIF+ S L
Sbjct: 61 IYFCSKHFEEDCFELVGISGYHR-LKEGAVPTIFESFSKL 99
>gi|56788349 THAP domain containing 7 isoform 1 [Homo sapiens]
Length = 309
Score = 48.9 bits (115), Expect = 2e-05
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 1 MPNFCAAPNC----TRKSTQSDLAFFRFPR-DPARCQKWVENCRRADLEDKTP-DQLNKH 54
MP C+A C TR++ ++F R P+ D R W+ NC+R D + D +++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60
Query: 55 YRLCAKHFETSM--ICRTSPYRTVLRDNAIPTIFDLTSHL 92
C+KHFE + S Y L++ A+PTIF+ S L
Sbjct: 61 IYFCSKHFEEDCFELVGISGYHR-LKEGAVPTIFESFSKL 99
>gi|31982895 THAP domain containing 4 [Homo sapiens]
Length = 577
Score = 46.2 bits (108), Expect = 1e-04
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 5 CAAPNCTRKSTQSD---LAFFRFP-RDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAK 60
CAA NC+ + + + ++F RFP +D R +W++ +R ++ TP K+ LC++
Sbjct: 5 CAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQR---DNWTP---TKYSFLCSE 58
Query: 61 HF-ETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSE 108
HF + S R +L+ A+P+IF LT R R K+ S+
Sbjct: 59 HFTKDSFSKRLEDQHRLLKPTAVPSIFHLTEKKRGAGGHGRTRRKDASK 107
>gi|46195755 SCAN domain containing 3 [Homo sapiens]
Length = 1325
Score = 45.8 bits (107), Expect = 1e-04
Identities = 66/360 (18%), Positives = 138/360 (38%), Gaps = 34/360 (9%)
Query: 233 TQQRQMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREE 292
T R++ E+ + ++ + +++ + +FS+ D+ DIA L V VRF + +++EE
Sbjct: 873 TIARRIQELAND-MEDQLIEQIKLAKYFSLQLDECRDIANMIILLVYVRF-EHDDDIKEE 930
Query: 293 FI--GFLPYEADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEK 350
F LP + L I K GL ++C G ++ + K V +++ E
Sbjct: 931 FFFSASLPTNTTSSELYEAVKNYIVNKCGLEFKFCVGVCSDGAASMTGKHSEVVTQIKEL 990
Query: 351 YPQAIYTLC----SSCALNMWLAKSVPVMGVSVALGTIEEVCSFFHRSPQLLLELDNVIS 406
P+ T C S A+ A+ ++ L I ++ ++ +S L L S
Sbjct: 991 APECKTTHCFIHRESLAMKKISAE------LNSVLNDIVKIVNYI-KSNSLNSRL---FS 1040
Query: 407 VLFQNSKERGKELKEICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGR 466
+L N + K+L +W R + E+ L++ ++ G+
Sbjct: 1041 LLCDNMEADHKQLLLHAEIRWLSRGKVLSRMFEIRNELLV---------------FLQGK 1085
Query: 467 AFVLCSAVSDFDFIVTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVME 526
+ D ++ + L ++ S ++QG+ + F A + L
Sbjct: 1086 KPMWSQLFKDVNWTARLAYLSDIFSIFNDLNASMQGKNATYFSMADKVEGQKQKLEAWKN 1145
Query: 527 NIEVYHEFWFEEATNLATKLDIQMKLPGKFRRAHQGNLESQLTSESYYKETLSVPTVEHI 586
I F T + ++ + + R+ +L + L +Y + P + ++
Sbjct: 1146 RISTDCYDMFHNLTTIINEVGNDLDI-AHLRKVISEHLTNLLECFEFYFPSKEDPRIGNL 1204
>gi|21389507 THAP domain containing 6 [Homo sapiens]
Length = 222
Score = 43.5 bits (101), Expect = 7e-04
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 7 APNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAKHFETSM 66
A C S L F FP D +KWV +R D+ + K LC++HF+ +
Sbjct: 11 ASRCLPNSKLKGLTFHVFPTDENIKRKWVLAMKRLDVNAAGIWEPKKGDVLCSRHFKKTD 70
Query: 67 ICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSR 98
R++P L+ IP+IFD HL +
Sbjct: 71 FDRSAP-NIKLKPGVIPSIFDSPYHLQGKREK 101
>gi|40354197 THAP domain containing 11 [Homo sapiens]
Length = 314
Score = 43.1 bits (100), Expect = 0.001
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 13/157 (8%)
Query: 1 MPNF-CAAPNCTRKSTQSD-LAFFRFPRDPARCQKWVENCRRADLED-KTPDQLNKHYRL 57
MP F C P C S + L F+ FP+D + W++N RA + + Q +RL
Sbjct: 1 MPGFTCCVPGCYNNSHRDKALHFYTFPKDAELRRLWLKNVSRAGVSGCFSTFQPTTGHRL 60
Query: 58 CAKHFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQK 117
C+ HF+ +T R +PTIF L +N R + + +Q+
Sbjct: 61 CSVHFQGGR--KTYTVR-------VPTIFPLRG-VNERKVARRPAGAAAARRRQQQQQQQ 110
Query: 118 KIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILP 154
+ + +Q+Q+ ++ Q S Q + P
Sbjct: 111 QQQQQQQQQQQQQQQQQQQQQQSSPSASTAQTAQLQP 147
>gi|22749337 THAP domain containing 8 [Homo sapiens]
Length = 274
Score = 42.4 bits (98), Expect = 0.002
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 1 MPNFCAAPNCTRK-----STQSDLAFFRFP-RDPARCQKWVENCRRADLEDKTPDQLNKH 54
MP +C APNC+ + ++F++FP +D R Q W+++ E P + H
Sbjct: 1 MPKYCRAPNCSNTAGRLGADNRPVSFYKFPLKDGPRLQAWLQH---MGCEHWVP---SCH 54
Query: 55 YRLCAKHFETSMICRTSPYRTVLRDNAIPTIF 86
LC++HF S R LR +A+P+IF
Sbjct: 55 QHLCSEHFTPSCFQWRWGVR-YLRPDAVPSIF 85
>gi|8922446 THAP domain containing, apoptosis associated protein 1
isoform 1 [Homo sapiens]
Length = 213
Score = 40.0 bits (92), Expect = 0.008
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 1 MPNFCAAPNC-TRKSTQSDLAFFRFPRD-PARCQKWVENCRRADLEDKTPDQLNKHYRLC 58
M C+A C R ++F +FP P+ C++W RR + + K+ +C
Sbjct: 1 MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKP------TKYSSIC 54
Query: 59 AKHFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSR 98
++HF R + +L++NA+PTIF T PH +
Sbjct: 55 SEHFTPDCFKRECNNK-LLKENAVPTIFLCT----EPHDK 89
>gi|94536788 THAP domain containing 9 [Homo sapiens]
Length = 903
Score = 39.7 bits (91), Expect = 0.011
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 1 MPNFCAAPNCTRKST----QSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYR 56
M C+A C+ + T + L+F +FP D + KW+ R D K
Sbjct: 1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIPGPGAI 60
Query: 57 LCAKHFETSMICRTSPYRTVLRDNAIPTI 85
LC+KHF+ S + R L+ A+P++
Sbjct: 61 LCSKHFQESDF-ESYGIRRKLKKGAVPSV 88
>gi|15149465 caldesmon 1 isoform 5 [Homo sapiens]
Length = 532
Score = 38.5 bits (88), Expect = 0.023
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 100 RKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEE 159
R+R E +E LKQK+ + E E+ K+ EE+ Q+E L E
Sbjct: 279 RRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEE--ADRKLRE 336
Query: 160 KENKEYLKSLFE---ILILMGKQNIPLDGHEADEIPEGLFTPDNFQALLECR 208
+E K LK E +Q +P DG D+ P FTP +E R
Sbjct: 337 EEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 388
Score = 31.6 bits (70), Expect = 2.9
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 97 SRHRKRIKELSEDEIRTLKQKKID--ETSEQEQKHKETNNSNAQNPSEEE-GEGQDEDIL 153
S R+ E+ E E T +K D + E +++ KE + P GE Q +D
Sbjct: 147 SESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQIKD-- 204
Query: 154 PLTLEEKENKEYLKSLFEI---LILMGKQNIPLDGHEADEI------PEGLFTPDNFQAL 204
++KE KE +KS + + QN H+ P G + D +A
Sbjct: 205 EKIKKDKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKLKHTENTFSRPGGRASVDTKEAE 264
Query: 205 LECRINSG---EEVLRKRFETTAVNTLFCSKTQQRQMLEICESCIREETLREV 254
++ +G EE+ R+R ET + + QQ LE+ E + E R+V
Sbjct: 265 GAPQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKV 317
>gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]
Length = 558
Score = 38.5 bits (88), Expect = 0.023
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 100 RKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEE 159
R+R E +E LKQK+ + E E+ K+ EE+ Q+E L E
Sbjct: 305 RRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEE--ADRKLRE 362
Query: 160 KENKEYLKSLFE---ILILMGKQNIPLDGHEADEIPEGLFTPDNFQALLECR 208
+E K LK E +Q +P DG D+ P FTP +E R
Sbjct: 363 EEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 414
Score = 32.0 bits (71), Expect = 2.2
Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 28/168 (16%)
Query: 115 KQKKIDETSEQEQKHKETNNSNAQNPSEEEG-------EGQDEDILPLTLEE-------- 159
+ KK D+ E+E++ K S +N EE+G E ED EE
Sbjct: 176 ENKKEDKEKEEEEEEKPKRGSIGENQGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKK 235
Query: 160 -KENKEYLKSLFEI---LILMGKQNIPLDGHEADEI------PEGLFTPDNFQALLECRI 209
KE KE +KS + + QN H+ P G + D +A ++
Sbjct: 236 DKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKLKHTENTFSRPGGRASVDTKEAEGAPQV 295
Query: 210 NSG---EEVLRKRFETTAVNTLFCSKTQQRQMLEICESCIREETLREV 254
+G EE+ R+R ET + + QQ LE+ E + E R+V
Sbjct: 296 EAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKV 343
>gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]
Length = 564
Score = 38.5 bits (88), Expect = 0.023
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 100 RKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEE 159
R+R E +E LKQK+ + E E+ K+ EE+ Q+E L E
Sbjct: 311 RRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEE--ADRKLRE 368
Query: 160 KENKEYLKSLFE---ILILMGKQNIPLDGHEADEIPEGLFTPDNFQALLECR 208
+E K LK E +Q +P DG D+ P FTP +E R
Sbjct: 369 EEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 420
Score = 32.0 bits (71), Expect = 2.2
Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 28/168 (16%)
Query: 115 KQKKIDETSEQEQKHKETNNSNAQNPSEEEG-------EGQDEDILPLTLEE-------- 159
+ KK D+ E+E++ K S +N EE+G E ED EE
Sbjct: 182 ENKKEDKEKEEEEEEKPKRGSIGENQGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKK 241
Query: 160 -KENKEYLKSLFEI---LILMGKQNIPLDGHEADEI------PEGLFTPDNFQALLECRI 209
KE KE +KS + + QN H+ P G + D +A ++
Sbjct: 242 DKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKLKHTENTFSRPGGRASVDTKEAEGAPQV 301
Query: 210 NSG---EEVLRKRFETTAVNTLFCSKTQQRQMLEICESCIREETLREV 254
+G EE+ R+R ET + + QQ LE+ E + E R+V
Sbjct: 302 EAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKV 349
>gi|4826657 caldesmon 1 isoform 2 [Homo sapiens]
Length = 538
Score = 38.5 bits (88), Expect = 0.023
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 100 RKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEE 159
R+R E +E LKQK+ + E E+ K+ EE+ Q+E L E
Sbjct: 285 RRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEE--ADRKLRE 342
Query: 160 KENKEYLKSLFE---ILILMGKQNIPLDGHEADEIPEGLFTPDNFQALLECR 208
+E K LK E +Q +P DG D+ P FTP +E R
Sbjct: 343 EEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 394
Score = 31.6 bits (70), Expect = 2.9
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 97 SRHRKRIKELSEDEIRTLKQKKID--ETSEQEQKHKETNNSNAQNPSEEE-GEGQDEDIL 153
S R+ E+ E E T +K D + E +++ KE + P GE Q +D
Sbjct: 153 SESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQIKD-- 210
Query: 154 PLTLEEKENKEYLKSLFEI---LILMGKQNIPLDGHEADEI------PEGLFTPDNFQAL 204
++KE KE +KS + + QN H+ P G + D +A
Sbjct: 211 EKIKKDKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKLKHTENTFSRPGGRASVDTKEAE 270
Query: 205 LECRINSG---EEVLRKRFETTAVNTLFCSKTQQRQMLEICESCIREETLREV 254
++ +G EE+ R+R ET + + QQ LE+ E + E R+V
Sbjct: 271 GAPQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKV 323
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 38.5 bits (88), Expect = 0.023
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 100 RKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEE 159
R+R E +E LKQK+ + E E+ K+ EE+ Q+E L E
Sbjct: 540 RRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEE--ADRKLRE 597
Query: 160 KENKEYLKSLFE---ILILMGKQNIPLDGHEADEIPEGLFTPDNFQALLECR 208
+E K LK E +Q +P DG D+ P FTP +E R
Sbjct: 598 EEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 649
>gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Homo
sapiens]
Length = 864
Score = 38.1 bits (87), Expect = 0.031
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 94 NPHSRHRKRIKELSEDEIRTLKQKKIDETSEQ-EQKHKETNNSNAQNPSEEEGEGQDEDI 152
N + K +K++ + R K+ K++E + E++ ++ N ++ EEE G E++
Sbjct: 583 NSENLSAKELKKMLSKQRRAQKKAKLEEERKHAERERQQKNQKKKRDEEEEEASGLKEEL 642
Query: 153 LPLTLEEKEN 162
+P LE EN
Sbjct: 643 IPEKLERVEN 652
>gi|67782362 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Homo
sapiens]
Length = 1369
Score = 37.7 bits (86), Expect = 0.040
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 118 KIDETSEQEQKHKETNNSNAQNPSEE-EGEGQDEDILPLTLEEK--ENKEYLKSLFEIL- 173
K+ + +Q+Q+H E N+++P E E DED L+LE E+ E +++LF L
Sbjct: 498 KLKQQQQQQQQHSENKRENSEDPEESWENLVSDEDFSALSLESANVEDLEPVRNLFRKLQ 557
Query: 174 -------ILMGKQNIPLDGHEADEIPEGL 195
+L +Q +P+ H D I E L
Sbjct: 558 STPKYQKLLKERQQLPVFKHR-DSIVETL 585
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 37.0 bits (84), Expect = 0.068
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 100 RKRIKELSEDEIRT---LKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDED 151
++ +KE E+E++ +K+K+ E E+E+ ++ +N +EEEGE +DE+
Sbjct: 370 QQEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEE 424
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 36.2 bits (82), Expect = 0.12
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 104 KELSEDEIRTLKQKKIDETSEQEQKH-KETNNSNAQNPSEEEGEGQDEDILPLTLEEKEN 162
KEL+E E + + E E+EQ H KE N + EE GEG++E+ EE+E
Sbjct: 694 KELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEE---GDREEEEE 750
Query: 163 KE 164
KE
Sbjct: 751 KE 752
>gi|28460688 taxilin [Homo sapiens]
Length = 546
Score = 35.8 bits (81), Expect = 0.15
Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 22/212 (10%)
Query: 47 TPDQLNKHYRLCAKHFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRH---RKRI 103
TP++ K LC K+ E R S + L + HL HS+ R ++
Sbjct: 184 TPEE--KLAALCKKYAELLEEHRNSQKQMKLLQKKQSQLVQEKDHLRGEHSKAVLARSKL 241
Query: 104 KELSED---EIRTLKQKKIDETSEQEQKHKETNN--SNAQNPSEEEGEGQDEDILPLTLE 158
+ L + R+LK++ + E+E+K KE + N + + E +E L E
Sbjct: 242 ESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQLQMEQHNERNSKLRQE 301
Query: 159 EKENKEYLKSLFEILILMGKQNIPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRK 218
E E LK L E L + I + D Q L++ ++ +E+L++
Sbjct: 302 NMELAERLKKLIEQYEL-----------REEHIDKVFKHKDLQQQLVDAKLQQAQEMLKE 350
Query: 219 RFETTAVNTLFCSKTQQRQMLEICESCIREET 250
E F K + + +CE ++ET
Sbjct: 351 AEERHQREKDFLLK-EAVESQRMCELMKQQET 381
>gi|8923271 coiled-coil domain containing 49 [Homo sapiens]
Length = 425
Score = 35.8 bits (81), Expect = 0.15
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 92 LNNPHSRHRKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEE 144
LNNP K+IKEL + + ++KK E ++ +KHK ++S+ ++ SE+E
Sbjct: 154 LNNPVKM--KKIKELLQMSLEKKEKKKKKEKKKKHKKHKHRSSSSDRSSSEDE 204
>gi|197276647 leucine rich repeat (in FLII) interacting protein 2
isoform 3 [Homo sapiens]
Length = 424
Score = 35.4 bits (80), Expect = 0.20
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 31/142 (21%)
Query: 63 ETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKIDET 122
+TS + + LRD I+DL + + R+ + +KEL E
Sbjct: 98 DTSSLIDPDTSLSELRD-----IYDLKDQIQDVEGRYMQGLKELKES------------L 140
Query: 123 SEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEE---------KENKEYLKSLFEIL 173
SE E+K+K+ SNAQ +E+ D L +EE +EN+E K L
Sbjct: 141 SEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELER-- 198
Query: 174 ILMGKQNIPLDGHEADEIPEGL 195
K + H+ +E+ EGL
Sbjct: 199 ---QKHMCSVLQHKMEELKEGL 217
>gi|5453726 leucine rich repeat (in FLII) interacting protein 2
isoform 1 [Homo sapiens]
Length = 721
Score = 35.4 bits (80), Expect = 0.20
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 31/142 (21%)
Query: 63 ETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKIDET 122
+TS + + LRD I+DL + + R+ + +KEL E
Sbjct: 330 DTSSLIDPDTSLSELRD-----IYDLKDQIQDVEGRYMQGLKELKES------------L 372
Query: 123 SEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEE---------KENKEYLKSLFEIL 173
SE E+K+K+ SNAQ +E+ D L +EE +EN+E K L
Sbjct: 373 SEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELER-- 430
Query: 174 ILMGKQNIPLDGHEADEIPEGL 195
K + H+ +E+ EGL
Sbjct: 431 ---QKHMCSVLQHKMEELKEGL 449
>gi|124249396 coiled-coil domain containing 30 [Homo sapiens]
Length = 783
Score = 35.0 bits (79), Expect = 0.26
Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 15/205 (7%)
Query: 97 SRHRKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLT 156
S+ R+R K+L+ K K++ Q+ K + N + E E +D ++
Sbjct: 14 SKEREREKQLASGLDTAEKALKVESEELQKSKSELICLYNEVHNLPGESESKDHFLIACD 73
Query: 157 LEEKENKEYLKSLFEILILMGKQN-IPLDGHEADEIPEGLFTPDNFQALLECR-INSGEE 214
L ++EN E + ++ + N L G A P L T +N C+ S E
Sbjct: 74 LLQRENSELETKVLKLSQEFAQLNHFTLGGKTA---PSNLITSEN-----TCKDPESNEP 125
Query: 215 VLRKRFETTAVNT-LFCSKTQQRQMLEICESCIREETLREVRDSHFFSIITDDVVDIAGE 273
+L ++ T C K +R+ EI E ++E + S D+ D E
Sbjct: 126 ILETEIQSRKEETEELCPKLGERKQKEIPEESVKEGSFPREGQKEEGSQQNRDMKDEEKE 185
Query: 274 EHLPV----LVRFVDESHNLREEFI 294
+ L + +VR +E ++ + +
Sbjct: 186 QQLTMKPEEIVRLREELSHINQSLL 210
>gi|15559209 interleukin 33 [Homo sapiens]
Length = 270
Score = 34.7 bits (78), Expect = 0.34
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 36 ENCRRADLEDKTPDQLNKHYRLCAKHFETSMIC------RTSPYRTVLRDNAIPTIFDLT 89
E +R L KT + +H L A ++++ C Y L D++I I +T
Sbjct: 63 ETTKRPSL--KTGRKHKRHLVLAACQQQSTVECFAFGISGVQKYTRALHDSSITGISPIT 120
Query: 90 SHLNNPHSRHRKRIKELSEDEIRTLKQKKIDETSEQEQKHKET-NNSNAQNPSEEEGEGQ 148
+L + + + + I EDE + +++ + E+K K + +Q+PS E G+G
Sbjct: 121 EYLASLSTYNDQSITFALEDESYEIY---VEDLKKDEKKDKVLLSYYESQHPSNESGDGV 177
Query: 149 DEDILPLTL 157
D +L +TL
Sbjct: 178 DGKMLMVTL 186
>gi|149773449 zinc finger protein 862 [Homo sapiens]
Length = 1169
Score = 34.7 bits (78), Expect = 0.34
Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 27/219 (12%)
Query: 209 INSGEEVLRKRFET-TAVNTLFCSKTQQRQMLEICESCIREETLREVRDSHFFSIITDDV 267
+N E++L+ T T + + ++T Q ++ ++ E L +VR+S S++ D
Sbjct: 572 LNDFEKILQLLQSTGTVILGKYRNRTACTQFIKYISETLKREILEDVRNSPCVSVLLDSS 631
Query: 268 VDIAGEEHLPVLVRFVDESHNLREEFIGFLPYEADAEILAVKFHTMITEKWGLNMEYCRG 327
D + + + + +R+ + ++E +I P +E F T+++ L++ + R
Sbjct: 632 TDASEQACVGIYIRYFKQM-EVKESYITLAPLY--SETADGYFETIVSALDELDIPF-RK 687
Query: 328 QAYIVSSGF-SSKMKVVASRLLEKYPQAIYTLCSSCALNMWLAKSVPVMGVSVALG-TIE 385
++V G S M L+EK+ + I L +PV V+ L +
Sbjct: 688 PGWVVGLGTDGSAMLSCRGGLVEKFQEVIPQL-------------LPVHCVAHRLHLAVV 734
Query: 386 EVCSFFHRSPQLLLELDNVISVLF---QNSKERGKELKE 421
+ C S L+ + D I +F Q+S +R EL+E
Sbjct: 735 DACG----SIDLVKKCDRHIRTVFKFYQSSNKRLNELQE 769
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 34.3 bits (77), Expect = 0.44
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 100 RKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPL---- 155
+ R+KE+ + + +K + + +K E +NS + E+ +G DE + L
Sbjct: 113 KNRLKEIEHNLSKIMKLDNEIKALDSRKKQMEKDNSELEEKMEKVFQGTDEQLNDLYHNH 172
Query: 156 --TLEEKENK-----EYLKSL-----------FEILILMGKQNIPLDGHE-----ADEIP 192
T+ EKE K L+ L E+L+ G+ + D H+ D +
Sbjct: 173 QRTVREKERKLVDCHRELEKLNKESRLLNQEKSELLVEQGRLQLQADRHQEHIRARDSLI 232
Query: 193 EGLFTP---DNFQ--ALLECRINSGEEVLRKRFETTAVNTLFCSKTQQRQMLEICE-SCI 246
+ L T D F+ E +I + +++R+R E A KT + M + E +
Sbjct: 233 QSLATQLELDGFERGPFSERQIKNFHKLVRERQEGEA-------KTANQLMNDFAEKETL 285
Query: 247 REETLREVRD 256
+++ + E+RD
Sbjct: 286 KQKQIDEIRD 295
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,369,356
Number of Sequences: 37866
Number of extensions: 1282096
Number of successful extensions: 7009
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 6269
Number of HSP's gapped (non-prelim): 636
length of query: 761
length of database: 18,247,518
effective HSP length: 110
effective length of query: 651
effective length of database: 14,082,258
effective search space: 9167549958
effective search space used: 9167549958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.