CALD1 5180

Name: CALD1	Sequence: fasta or formatted (532aa)		NCBI GI: 15149465
Description: caldesmon 1 isoform 5		Referenced in: Cytoskeleton
Other entries for this name: alt prot [558aa] caldesmon 1 isoform 4 alt prot [564aa] caldesmon 1 isoform 3 alt prot [793aa] caldesmon 1 isoform 1 alt prot [538aa] caldesmon 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.0 37 2 C cysteine 0.2 1 1 D aspartate 5.1 27 3 E glutamate 16.9 90 6 F phenylalanine 2.1 11 1 G glycine 4.9 26 2 H histidine 0.8 4 1 I isoleucine 2.4 13 1 K lysine 12.0 64 3 L leucine 5.6 30 1 M methionine 1.1 6 1 N asparagine 3.4 18 1 P proline 4.1 22 1 Q glutamine 5.3 28 2 R arginine 9.6 51 4 S serine 7.7 41 2 T threonine 6.0 32 4 V valine 4.3 23 1 W tryptophan 0.8 4 1 Y tyrosine 0.8 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 caldesmon 1 isoform 5 CALD1 0.986 caldesmon 1 isoform 4 CALD1 0.967 caldesmon 1 isoform 2 CALD1 0.954 caldesmon 1 isoform 3 CALD1 0.657 caldesmon 1 isoform 1 TCHH 0.074 trichohyalin LOC100286959 0.067 PREDICTED: hypothetical protein XP_002343921 LOC283685 0.066 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC283685 0.066 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC100133758 0.065 PREDICTED: hypothetical protein, partial LOC727832 0.063 golgi autoantigen, golgin subfamily a-like LOC283767 0.063 golgi autoantigen, golgin subfamily a-like LOC100133599 0.062 PREDICTED: hypothetical protein LOC645202 0.062 PREDICTED: hypothetical protein LOC645202 LOC440243 0.062 PREDICTED: Putative golgin subfamily A member 6-lik... LAD1 0.062 ladinin 1 RBM25 0.055 RNA binding motif protein 25 EIF5B 0.054 eukaryotic translation initiation factor 5B NEXN 0.054 nexilin (F actin binding protein) INCENP 0.053 inner centromere protein antigens 135/155kDa isofor... PRPF38B 0.053 PRP38 pre-mRNA processing factor 38 (yeast) domain ... LOC400352 0.052 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.052 PREDICTED: similar to Putative golgin subfamily A m... CCDC19 0.052 nasopharyngeal epithelium specific protein 1 PLEC1 0.051 plectin 1 isoform 11 PLEC1 0.051 plectin 1 isoform 10 PLEC1 0.051 plectin 1 isoform 8 PLEC1 0.051 plectin 1 isoform 7 PLEC1 0.051 plectin 1 isoform 6 PLEC1 0.051 plectin 1 isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.