Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: THAP6 Sequence: fasta or formatted (222aa) NCBI GI: 21389507
Description:

THAP domain containing 6

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          9           2
 C cysteine            5.0         11           2
 D aspartate           6.3         14           1
 E glutamate           6.8         15           2
 F phenylalanine       5.0         11           1
 G glycine             3.6          8           1
 H histidine           4.1          9           2
 I isoleucine          5.9         13           1
 K lysine             11.3         25           2
 L leucine             9.0         20           1
 M methionine          1.4          3           1
 N asparagine          4.1          9           1
 P proline             4.1          9           1
 Q glutamine           3.2          7           1
 R arginine            5.9         13           1
 S serine              8.1         18           2
 T threonine           4.5         10           1
 V valine              5.0         11           1
 W tryptophan          1.4          3           1
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   THAP domain containing 6 
THAP9                 0.157   THAP domain containing 9 
THAP2                 0.107   THAP domain containing, apoptosis associated protein...
THAP7                 0.084   THAP domain containing 7 isoform 2 
THAP7                 0.084   THAP domain containing 7 isoform 1 
THAP1                 0.070   THAP domain containing, apoptosis associated protein ...
THAP4                 0.066   THAP domain containing 4 
THAP5                 0.064   THAP domain containing 5 isoform 1 
THAP3                 0.059   THAP domain containing, apoptosis associated protein...
PRKRIR                0.043   protein-kinase, interferon-inducible double stranded...
THAP11                0.032   THAP domain containing 11 
CCDC150               0.025   coiled-coil domain containing 150 
THAP5                 0.018   THAP domain containing 5 isoform 2 
MYH4                  0.018   myosin, heavy polypeptide 4, skeletal muscle 
SYNE2                 0.018   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.018   spectrin repeat containing, nuclear envelope 2 isof...
MYH1                  0.018   myosin, heavy chain 1, skeletal muscle, adult [Homo...
CCDC120               0.016   coiled-coil domain containing 120 isoform 3 
CCDC120               0.016   coiled-coil domain containing 120 isoform 4 
CCDC120               0.016   coiled-coil domain containing 120 isoform 2 
CCDC120               0.016   coiled-coil domain containing 120 isoform 1 
MYH2                  0.016   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.016   myosin, heavy chain 2, skeletal muscle, adult [Homo...
FAM184A               0.016   hypothetical protein LOC79632 isoform 2 
FAM184A               0.016   hypothetical protein LOC79632 isoform 1 
FRMD4B                0.016   FERM domain containing 4B 
SIPA1L1               0.014   signal-induced proliferation-associated 1 like 1 [Hom...
ANO5                  0.014   anoctamin 5 isoform a 
FILIP1L               0.014   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.014   filamin A interacting protein 1-like isoform 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press