Guide to the Human Genome
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Name: CALD1 Sequence: fasta or formatted (538aa) NCBI GI: 4826657
Description:

caldesmon 1 isoform 2

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [558aa] caldesmon 1 isoform 4
alt prot [532aa] caldesmon 1 isoform 5
alt prot [564aa] caldesmon 1 isoform 3
alt prot [793aa] caldesmon 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         36           2
 C cysteine            0.2          1           1
 D aspartate           5.4         29           3
 E glutamate          17.8         96           6
 F phenylalanine       2.2         12           1
 G glycine             4.1         22           2
 H histidine           0.6          3           1
 I isoleucine          2.4         13           1
 K lysine             12.1         65           3
 L leucine             5.4         29           1
 M methionine          1.3          7           1
 N asparagine          3.3         18           1
 P proline             4.1         22           1
 Q glutamine           5.2         28           2
 R arginine           10.6         57           4
 S serine              6.9         37           2
 T threonine           5.9         32           4
 V valine              4.3         23           1
 W tryptophan          0.7          4           1
 Y tyrosine            0.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caldesmon 1 isoform 2 
CALD1                 0.985   caldesmon 1 isoform 3 
CALD1                 0.955   caldesmon 1 isoform 5 
CALD1                 0.942   caldesmon 1 isoform 4 
CALD1                 0.654   caldesmon 1 isoform 1 
LOC100286959          0.082   PREDICTED: hypothetical protein XP_002343921 
TCHH                  0.080   trichohyalin 
LOC283685             0.073   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.071   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.068   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283767             0.067   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.066   golgi autoantigen, golgin subfamily a-like 
LOC100133758          0.066   PREDICTED: hypothetical protein, partial 
RBM25                 0.065   RNA binding motif protein 25 
LOC645202             0.062   PREDICTED: hypothetical protein LOC645202 
LOC100133599          0.061   PREDICTED: hypothetical protein 
EIF5B                 0.059   eukaryotic translation initiation factor 5B 
EIF3A                 0.055   eukaryotic translation initiation factor 3, subunit 1...
LAD1                  0.054   ladinin 1 
LOC400352             0.054   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.054   PREDICTED: similar to Putative golgin subfamily A m...
RPGR                  0.054   retinitis pigmentosa GTPase regulator isoform C [Hom...
NEXN                  0.054   nexilin (F actin binding protein) 
INCENP                0.053   inner centromere protein antigens 135/155kDa isofor...
PLEC1                 0.053   plectin 1 isoform 11 
PLEC1                 0.053   plectin 1 isoform 10 
PLEC1                 0.053   plectin 1 isoform 8 
PLEC1                 0.053   plectin 1 isoform 7 
PLEC1                 0.053   plectin 1 isoform 6 
PLEC1                 0.053   plectin 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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