CALD1 30969

Name: CALD1	Sequence: fasta or formatted (538aa)		NCBI GI: 4826657
Description: caldesmon 1 isoform 2		Referenced in: Cytoskeleton
Other entries for this name: alt prot [558aa] caldesmon 1 isoform 4 alt prot [532aa] caldesmon 1 isoform 5 alt prot [564aa] caldesmon 1 isoform 3 alt prot [793aa] caldesmon 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.7 36 2 C cysteine 0.2 1 1 D aspartate 5.4 29 3 E glutamate 17.8 96 6 F phenylalanine 2.2 12 1 G glycine 4.1 22 2 H histidine 0.6 3 1 I isoleucine 2.4 13 1 K lysine 12.1 65 3 L leucine 5.4 29 1 M methionine 1.3 7 1 N asparagine 3.3 18 1 P proline 4.1 22 1 Q glutamine 5.2 28 2 R arginine 10.6 57 4 S serine 6.9 37 2 T threonine 5.9 32 4 V valine 4.3 23 1 W tryptophan 0.7 4 1 Y tyrosine 0.7 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 caldesmon 1 isoform 2 CALD1 0.985 caldesmon 1 isoform 3 CALD1 0.955 caldesmon 1 isoform 5 CALD1 0.942 caldesmon 1 isoform 4 CALD1 0.654 caldesmon 1 isoform 1 LOC100286959 0.082 PREDICTED: hypothetical protein XP_002343921 TCHH 0.080 trichohyalin LOC283685 0.073 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC283685 0.071 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC440243 0.068 PREDICTED: Putative golgin subfamily A member 6-lik... LOC283767 0.067 golgi autoantigen, golgin subfamily a-like LOC727832 0.066 golgi autoantigen, golgin subfamily a-like LOC100133758 0.066 PREDICTED: hypothetical protein, partial RBM25 0.065 RNA binding motif protein 25 LOC645202 0.062 PREDICTED: hypothetical protein LOC645202 LOC100133599 0.061 PREDICTED: hypothetical protein EIF5B 0.059 eukaryotic translation initiation factor 5B EIF3A 0.055 eukaryotic translation initiation factor 3, subunit 1... LAD1 0.054 ladinin 1 LOC400352 0.054 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.054 PREDICTED: similar to Putative golgin subfamily A m... RPGR 0.054 retinitis pigmentosa GTPase regulator isoform C [Hom... NEXN 0.054 nexilin (F actin binding protein) INCENP 0.053 inner centromere protein antigens 135/155kDa isofor... PLEC1 0.053 plectin 1 isoform 11 PLEC1 0.053 plectin 1 isoform 10 PLEC1 0.053 plectin 1 isoform 8 PLEC1 0.053 plectin 1 isoform 7 PLEC1 0.053 plectin 1 isoform 6 PLEC1 0.053 plectin 1 isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.