Guide to the Human Genome
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Name: THAP4 Sequence: fasta or formatted (577aa) NCBI GI: 31982895
Description:

THAP domain containing 4

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         46           2
 C cysteine            2.1         12           2
 D aspartate           3.8         22           2
 E glutamate           6.4         37           2
 F phenylalanine       3.1         18           1
 G glycine             6.8         39           2
 H histidine           3.1         18           1
 I isoleucine          2.8         16           1
 K lysine              7.1         41           2
 L leucine             6.8         39           2
 M methionine          1.9         11           1
 N asparagine          2.4         14           1
 P proline             7.6         44           2
 Q glutamine           5.4         31           2
 R arginine            6.4         37           2
 S serine             12.7         73           3
 T threonine           5.9         34           3
 V valine              5.7         33           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   THAP domain containing 4 
THAP5                 0.062   THAP domain containing 5 isoform 1 
THAP1                 0.050   THAP domain containing, apoptosis associated protein ...
THAP8                 0.046   THAP domain containing 8 
THAP2                 0.038   THAP domain containing, apoptosis associated protein...
THAP3                 0.033   THAP domain containing, apoptosis associated protein...
THAP7                 0.031   THAP domain containing 7 isoform 2 
THAP7                 0.031   THAP domain containing 7 isoform 1 
THAP5                 0.028   THAP domain containing 5 isoform 2 
THAP6                 0.026   THAP domain containing 6 
THAP9                 0.025   THAP domain containing 9 
MUC4                  0.020   mucin 4 isoform a 
PRKRIR                0.018   protein-kinase, interferon-inducible double stranded...
APC                   0.018   adenomatous polyposis coli 
APC                   0.018   adenomatous polyposis coli 
APC                   0.018   adenomatous polyposis coli 
NOLC1                 0.018   nucleolar and coiled-body phosphoprotein 1 
MARCKS                0.018   myristoylated alanine-rich protein kinase C substra...
SLC12A2               0.017   solute carrier family 12 (sodium/potassium/chloride t...
LOC342346             0.016   hypothetical protein LOC342346 
SRRM2                 0.016   splicing coactivator subunit SRm300 
LOC100133794          0.015   PREDICTED: hypothetical protein, partial 
FLJ22184              0.015   PREDICTED: hypothetical protein LOC80164 
CDC2L5                0.015   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.015   cell division cycle 2-like 5 isoform 2 
SETD1A                0.015   SET domain containing 1A 
LOC100130716          0.015   PREDICTED: similar to mucin 11 
LOC100130716          0.015   PREDICTED: similar to Mucin-12 
REXO1                 0.015   transcription elongation factor B polypeptide 3 bin...
FNDC1                 0.013   fibronectin type III domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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