Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SHC4 Sequence: fasta or formatted (630aa) NCBI GI: 222446609
Description:

rai-like protein

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         38           2
 C cysteine            3.0         19           1
 D aspartate           4.4         28           2
 E glutamate           5.2         33           2
 F phenylalanine       2.1         13           1
 G glycine             7.8         49           2
 H histidine           4.0         25           2
 I isoleucine          3.5         22           2
 K lysine              4.9         31           2
 L leucine            10.2         64           3
 M methionine          2.5         16           1
 N asparagine          4.1         26           2
 P proline             7.8         49           3
 Q glutamine           5.9         37           2
 R arginine            5.2         33           1
 S serine             10.2         64           2
 T threonine           4.9         31           2
 V valine              5.4         34           1
 W tryptophan          0.3          2           1
 Y tyrosine            2.5         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rai-like protein 
SHC1                  0.354   SHC (Src homology 2 domain containing) transforming...
SHC1                  0.354   SHC (Src homology 2 domain containing) transforming...
SHC3                  0.338   src homology 2 domain-containing transforming prote...
SHC1                  0.320   SHC (Src homology 2 domain containing) transforming ...
SHC1                  0.319   SHC (Src homology 2 domain containing) transforming...
SHC2                  0.276   SHC (Src homology 2 domain containing) transforming...
LOC100291393          0.081   PREDICTED: hypothetical protein XP_002347924 
FER                   0.037   fer (fps/fes related) tyrosine kinase 
BCAR3                 0.027   breast cancer antiestrogen resistance 3 
SH2B2                 0.026   SH2B adaptor protein 2 
SH2D3C                0.025   SH2 domain containing 3C isoform e 
SH2D3C                0.025   SH2 domain containing 3C isoform d 
SH2D3C                0.025   SH2 domain containing 3C isoform b 
SH2D3C                0.025   SH2 domain containing 3C isoform a 
FES                   0.023   feline sarcoma oncogene isoform 2 
FES                   0.023   feline sarcoma oncogene isoform 1 
ABL2                  0.021   arg tyrosine kinase isoform c 
ABL2                  0.021   arg tyrosine kinase isoform b 
ABL2                  0.021   arg tyrosine kinase isoform e 
ABL2                  0.021   arg tyrosine kinase isoform d 
ABL2                  0.021   arg tyrosine kinase isoform a 
SH2B1                 0.021   SH2B adaptor protein 1 isoform 1 
SH2B1                 0.021   SH2B adaptor protein 1 isoform 2 
SH2B1                 0.021   SH2B adaptor protein 1 isoform 3 
SH2B1                 0.021   SH2B adaptor protein 1 isoform 2 
SH2B1                 0.021   SH2B adaptor protein 1 isoform 2 
APBA1                 0.021   amyloid beta A4 precursor protein-binding, family A,...
SHB                   0.021   Src homology 2 domain containing adaptor protein B ...
SHF                   0.021   Src homology 2 domain containing F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press