PCDHB1 3847

Name: PCDHB1	Sequence: fasta or formatted (818aa)		NCBI GI: 14195607
Description: protocadherin beta 1 precursor		Referenced in: Cadherins and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 43 2 C cysteine 1.1 9 1 D aspartate 6.7 55 2 E glutamate 5.6 46 2 F phenylalanine 4.6 38 1 G glycine 6.5 53 3 H histidine 2.3 19 1 I isoleucine 5.1 42 2 K lysine 4.2 34 1 L leucine 10.6 87 2 M methionine 1.7 14 2 N asparagine 5.5 45 2 P proline 5.9 48 2 Q glutamine 4.2 34 1 R arginine 4.9 40 2 S serine 8.3 68 2 T threonine 5.1 42 2 V valine 9.3 76 3 W tryptophan 0.1 1 1 Y tyrosine 2.9 24 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin beta 1 precursor PCDHB16 0.482 protocadherin beta 16 precursor PCDHB3 0.477 protocadherin beta 3 precursor PCDHB2 0.477 protocadherin beta 2 precursor PCDHB7 0.476 protocadherin beta 7 precursor PCDHB15 0.475 protocadherin beta 15 precursor PCDHB13 0.472 protocadherin beta 13 precursor PCDHB8 0.471 protocadherin beta 8 precursor PCDHB4 0.471 protocadherin beta 4 precursor PCDHB14 0.471 protocadherin beta 14 precursor PCDHB5 0.469 protocadherin beta 5 precursor PCDHB12 0.468 protocadherin beta 12 precursor PCDHB6 0.465 protocadherin beta 6 precursor PCDHB9 0.464 protocadherin beta 9 precursor PCDHB10 0.464 protocadherin beta 10 precursor PCDHB11 0.464 protocadherin beta 11 precursor PCDHGA1 0.362 protocadherin gamma subfamily A, 1 isoform 1 precurs... PCDHGA1 0.362 protocadherin gamma subfamily A, 1 isoform 2 precurs... PCDHGA11 0.357 protocadherin gamma subfamily A, 11 isoform 2 precur... PCDHGA11 0.357 protocadherin gamma subfamily A, 11 isoform 1 precur... PCDHGA6 0.354 protocadherin gamma subfamily A, 6 isoform 1 precurs... PCDHGA6 0.354 protocadherin gamma subfamily A, 6 isoform 2 precurs... PCDHGA4 0.352 protocadherin gamma subfamily A, 4 isoform 2 precurs... PCDHGA4 0.352 protocadherin gamma subfamily A, 4 isoform 1 precurs... PCDHGA10 0.349 protocadherin gamma subfamily A, 10 isoform 1 precur... PCDHGA10 0.349 protocadherin gamma subfamily A, 10 isoform 2 precur... PCDHGB6 0.348 protocadherin gamma subfamily B, 6 isoform 2 precurs... PCDHGB2 0.347 protocadherin gamma subfamily B, 2 isoform 1 precurs... PCDHGB6 0.347 protocadherin gamma subfamily B, 6 isoform 1 precurs... PCDHGA7 0.347 protocadherin gamma subfamily A, 7 isoform 1 precurs... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.