Guide to the Human Genome
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Name: PMS1 Sequence: fasta or formatted (770aa) NCBI GI: 189458898
Description:

postmeiotic segregation 1 isoform c

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [893aa] postmeiotic segregation 1 isoform b
alt prot [932aa] postmeiotic segregation 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         36           2
 C cysteine            1.8         14           2
 D aspartate           5.8         45           2
 E glutamate           7.4         57           3
 F phenylalanine       3.5         27           2
 G glycine             4.5         35           1
 H histidine           2.7         21           2
 I isoleucine          6.6         51           2
 K lysine              7.7         59           2
 L leucine             9.4         72           2
 M methionine          2.2         17           1
 N asparagine          7.3         56           3
 P proline             3.8         29           1
 Q glutamine           3.4         26           1
 R arginine            3.1         24           1
 S serine              9.9         76           3
 T threonine           5.6         43           2
 V valine              6.5         50           2
 W tryptophan          0.5          4           1
 Y tyrosine            3.6         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   postmeiotic segregation 1 isoform c 
PMS1                  0.796   postmeiotic segregation 1 isoform a 
PMS1                  0.732   postmeiotic segregation 1 isoform b 
PMS2                  0.104   PMS2 postmeiotic segregation increased 2 isoform a [H...
MLH1                  0.070   MutL protein homolog 1 
LOC100288713          0.066   PREDICTED: hypothetical protein XP_002342778 
LOC730323             0.066   PREDICTED: similar to Postmeiotic segregation incre...
MLH3                  0.052   mutL homolog 3 isoform 1 
MLH3                  0.052   mutL homolog 3 isoform 2 
SRY                   0.014   sex determining region Y 
LOC646993             0.009   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.009   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.009   PREDICTED: similar to high mobility group box 3 [Ho...
HMGB2                 0.009   high-mobility group box 2 
HMGB2                 0.009   high-mobility group box 2 
HMGB2                 0.009   high-mobility group box 2 
SSRP1                 0.009   structure specific recognition protein 1 
HMGB3                 0.009   high-mobility group box 3 
LOC729595             0.009   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.009   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.009   PREDICTED: similar to high mobility group box 3 iso...
LOC729595             0.009   PREDICTED: similar to high mobility group box 3 iso...
SOX2                  0.008   sex-determining region Y-box 2 
SOX30                 0.008   SRY (sex determining region Y)-box 30 isoform b [Homo...
SOX30                 0.008   SRY (sex determining region Y)-box 30 isoform a [Hom...
SOX1                  0.008   SRY (sex determining region Y)-box 1 
TOX2                  0.008   TOX high mobility group box family member 2 isoform...
TOX2                  0.008   TOX high mobility group box family member 2 isoform...
TOX2                  0.008   TOX high mobility group box family member 2 isoform...
TOX2                  0.008   TOX high mobility group box family member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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