PMS1 29171

Name: PMS1	Sequence: fasta or formatted (932aa)		NCBI GI: 4505911
Description: postmeiotic segregation 1 isoform a		Referenced in: DNases, Recombination, and DNA Repair
Other entries for this name: alt prot [893aa] postmeiotic segregation 1 isoform b alt prot [770aa] postmeiotic segregation 1 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.6 43 2 C cysteine 1.6 15 2 D aspartate 5.5 51 2 E glutamate 7.9 74 3 F phenylalanine 3.3 31 2 G glycine 3.9 36 1 H histidine 2.6 24 2 I isoleucine 6.3 59 2 K lysine 8.9 83 2 L leucine 10.1 94 2 M methionine 2.6 24 1 N asparagine 7.0 65 3 P proline 4.1 38 1 Q glutamine 3.9 36 1 R arginine 3.4 32 2 S serine 9.3 87 3 T threonine 5.3 49 2 V valine 5.8 54 2 W tryptophan 0.6 6 1 Y tyrosine 3.3 31 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 postmeiotic segregation 1 isoform a PMS1 0.948 postmeiotic segregation 1 isoform b PMS1 0.657 postmeiotic segregation 1 isoform c PMS2 0.085 PMS2 postmeiotic segregation increased 2 isoform a [H... MLH1 0.058 MutL protein homolog 1 LOC100288713 0.055 PREDICTED: hypothetical protein XP_002342778 LOC730323 0.055 PREDICTED: similar to Postmeiotic segregation incre... MLH3 0.043 mutL homolog 3 isoform 1 MLH3 0.043 mutL homolog 3 isoform 2 HMGB2 0.015 high-mobility group box 2 HMGB2 0.015 high-mobility group box 2 HMGB2 0.015 high-mobility group box 2 SSRP1 0.014 structure specific recognition protein 1 HMGB1 0.014 high-mobility group box 1 HMGB3 0.013 high-mobility group box 3 TFAM 0.013 transcription factor A, mitochondrial SOX30 0.012 SRY (sex determining region Y)-box 30 isoform b [Homo... SOX30 0.012 SRY (sex determining region Y)-box 30 isoform a [Hom... C6orf204 0.012 chromosome 6 open reading frame 204 isoform a [Homo... LOC646993 0.011 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.011 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.011 PREDICTED: similar to high mobility group box 3 [Ho... UBTF 0.011 upstream binding transcription factor, RNA polymera... UBTF 0.011 upstream binding transcription factor, RNA polymera... UBTF 0.011 upstream binding transcription factor, RNA polymerase... HMGXB4 0.011 high-mobility group protein 2-like 1 LOC441795 0.011 PREDICTED: high mobility group protein B3-like prot... LOC441795 0.011 PREDICTED: high mobility group protein B3-like prot... HMGB1L1 0.011 high-mobility group box 1-like 1 SP100 0.011 nuclear antigen Sp100 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.