Guide to the Human Genome
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Name: PMS1 Sequence: fasta or formatted (893aa) NCBI GI: 189458896
Description:

postmeiotic segregation 1 isoform b

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [770aa] postmeiotic segregation 1 isoform c
alt prot [932aa] postmeiotic segregation 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         40           2
 C cysteine            1.7         15           2
 D aspartate           5.6         50           2
 E glutamate           8.0         71           3
 F phenylalanine       3.4         30           2
 G glycine             3.9         35           1
 H histidine           2.5         22           2
 I isoleucine          6.5         58           2
 K lysine              9.1         81           2
 L leucine            10.3         92           2
 M methionine          2.2         20           1
 N asparagine          7.1         63           3
 P proline             4.3         38           1
 Q glutamine           3.7         33           1
 R arginine            3.5         31           2
 S serine              9.1         81           3
 T threonine           5.4         48           2
 V valine              5.6         50           2
 W tryptophan          0.6          5           1
 Y tyrosine            3.4         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   postmeiotic segregation 1 isoform b 
PMS1                  0.989   postmeiotic segregation 1 isoform a 
PMS1                  0.632   postmeiotic segregation 1 isoform c 
PMS2                  0.086   PMS2 postmeiotic segregation increased 2 isoform a [H...
LOC100288713          0.057   PREDICTED: hypothetical protein XP_002342778 
LOC730323             0.057   PREDICTED: similar to Postmeiotic segregation incre...
MLH1                  0.055   MutL protein homolog 1 
MLH3                  0.039   mutL homolog 3 isoform 1 
MLH3                  0.039   mutL homolog 3 isoform 2 
HMGB2                 0.015   high-mobility group box 2 
HMGB2                 0.015   high-mobility group box 2 
HMGB2                 0.015   high-mobility group box 2 
SSRP1                 0.015   structure specific recognition protein 1 
HMGB1                 0.014   high-mobility group box 1 
HMGB3                 0.014   high-mobility group box 3 
TFAM                  0.013   transcription factor A, mitochondrial 
SOX30                 0.013   SRY (sex determining region Y)-box 30 isoform b [Homo...
SOX30                 0.013   SRY (sex determining region Y)-box 30 isoform a [Hom...
C6orf204              0.013   chromosome 6 open reading frame 204 isoform a [Homo...
LOC646993             0.012   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.012   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.012   PREDICTED: similar to high mobility group box 3 [Ho...
UBTF                  0.012   upstream binding transcription factor, RNA polymera...
UBTF                  0.012   upstream binding transcription factor, RNA polymera...
UBTF                  0.012   upstream binding transcription factor, RNA polymerase...
HMGXB4                0.012   high-mobility group protein 2-like 1 
LOC441795             0.012   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.012   PREDICTED: high mobility group protein B3-like prot...
HMGB1L1               0.012   high-mobility group box 1-like 1 
SP100                 0.011   nuclear antigen Sp100 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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