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Search of human proteins with 188497630
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188497630 hypothetical protein LOC55571 [Homo sapiens]
(510 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188497630 hypothetical protein LOC55571 [Homo sapiens] 1013 0.0
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 47 5e-05
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 46 7e-05
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 45 1e-04
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 45 1e-04
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 45 1e-04
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 44 3e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 44 3e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 44 3e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 44 3e-04
gi|55956788 nucleolin [Homo sapiens] 43 6e-04
gi|5032007 purine-rich element binding protein A [Homo sapiens] 43 6e-04
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 43 6e-04
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 43 6e-04
gi|119395750 keratin 1 [Homo sapiens] 43 8e-04
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 43 8e-04
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 43 8e-04
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 42 0.001
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 42 0.001
gi|55956899 keratin 9 [Homo sapiens] 42 0.001
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 42 0.001
gi|238859557 regulatory factor X1 [Homo sapiens] 42 0.002
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 42 0.002
gi|33620755 YEATS domain containing 2 [Homo sapiens] 42 0.002
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 42 0.002
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 41 0.002
gi|109452587 family with sequence similarity 98, member B isofor... 41 0.002
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 41 0.003
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 41 0.003
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 41 0.003
>gi|188497630 hypothetical protein LOC55571 [Homo sapiens]
Length = 510
Score = 1013 bits (2619), Expect = 0.0
Identities = 510/510 (100%), Positives = 510/510 (100%)
Query: 1 MPGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGR 60
MPGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGR
Sbjct: 1 MPGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGR 60
Query: 61 MSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPS 120
MSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPS
Sbjct: 61 MSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPS 120
Query: 121 AAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPP 180
AAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPP
Sbjct: 121 AAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPP 180
Query: 181 EKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASF 240
EKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASF
Sbjct: 181 EKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASF 240
Query: 241 PSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHICEDELAW 300
PSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHICEDELAW
Sbjct: 241 PSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHICEDELAW 300
Query: 301 LNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHI 360
LNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHI
Sbjct: 301 LNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHI 360
Query: 361 GLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 420
GLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL
Sbjct: 361 GLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 420
Query: 421 PPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIE 480
PPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIE
Sbjct: 421 PPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIE 480
Query: 481 FSRIREAAGLFRLLKTLDTGETPSETKMSK 510
FSRIREAAGLFRLLKTLDTGETPSETKMSK
Sbjct: 481 FSRIREAAGLFRLLKTLDTGETPSETKMSK 510
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 46.6 bits (109), Expect = 5e-05
Identities = 56/193 (29%), Positives = 74/193 (38%), Gaps = 18/193 (9%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMS 62
GGGA AA G S G G G S G GG G GSGSGG + S
Sbjct: 175 GGGAKAAEGCSNAHLHGGASVPPGGLGGGGGGGSSSGSSGGGGGSGSGSGGSSSSSSSSS 234
Query: 63 LTPKELSSL-LSIISEEAGGGSTFEGLSTAFHH------YFSKADHFRLGSVLVMLLQQP 115
KE +L L+I + E L+ A Y +L + +LL +
Sbjct: 235 KKSKEQKALRLNINARER---RRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKN 291
Query: 116 DLLPSA-----AQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPL 170
+L A +RL A + L ++ AA+ A L+PA A ++ P
Sbjct: 292 YILMQAQALEEMRRLVAYLNQGQAISAASLPSSAAAAAAAAALHPALGAY--EQAAGYPF 349
Query: 171 SGFLPPITP-PEK 182
S LPP PEK
Sbjct: 350 SAGLPPAASCPEK 362
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 27 GSASRSGFGGSGGGRGGASGPGSGSGGPGG-------PAGRMSLTPKELSSLLSIISEEA 79
G +G GG GGG G G GS G GG PAG S+ ++E +
Sbjct: 83 GGGGSAGSGGGGGGGVGVPGLLVGSAGVGGDPSLSSLPAGAALCLKYGESASRGSVAESS 142
Query: 80 GG 81
GG
Sbjct: 143 GG 144
Score = 30.0 bits (66), Expect = 5.2
Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 24 EAAGSASRSGFGGSGGGRGGASGPGSGSGGPG------GPAGRMSLTPKELSSLLSI-IS 76
E AG GG GG G G G G G PG G G SL+ + L +
Sbjct: 71 EGAGLLLPPPGGGGGGSAGSGGGGGGGVGVPGLLVGSAGVGGDPSLSSLPAGAALCLKYG 130
Query: 77 EEAGGGSTFE 86
E A GS E
Sbjct: 131 ESASRGSVAE 140
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 46.2 bits (108), Expect = 7e-05
Identities = 34/89 (38%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 6 ASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTP 65
+S S AA + AA SA G G GG GG SG GSGSGG GG AG
Sbjct: 450 SSNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGGAG------ 503
Query: 66 KELSSLLSIISEEAGGGSTFEGLSTAFHH 94
GGGS+ G TA H
Sbjct: 504 ------------GGGGGSSGGGSGTAGGH 520
Score = 46.2 bits (108), Expect = 7e-05
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 21/93 (22%)
Query: 8 AASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKE 67
AA+ AA + A SG GG+GGG GG SG G G GG GG G S
Sbjct: 456 AAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGGAGGGGGGSS----- 510
Query: 68 LSSLLSIISEEAGGGS----TFEGLSTAFHHYF 96
GGGS GLS+ F+ ++
Sbjct: 511 ------------GGGSGTAGGHSGLSSNFNEWY 531
Score = 44.7 bits (104), Expect = 2e-04
Identities = 28/72 (38%), Positives = 32/72 (44%)
Query: 6 ASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTP 65
A+AA+ AA GS S GGSGGG G G G GG GG +G S T
Sbjct: 458 AAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGGAGGGGGGSSGGGSGTA 517
Query: 66 KELSSLLSIISE 77
S L S +E
Sbjct: 518 GGHSGLSSNFNE 529
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 45.4 bits (106), Expect = 1e-04
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRM 61
P G A+SG L E S AA + S GG GGG G G SG+GG GG G
Sbjct: 42 PSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGG 101
Query: 62 SLTPKELSSLLSIISEEAGGG 82
S + L+ S +GGG
Sbjct: 102 S----NCNPNLAAASNGSGGG 118
Score = 32.0 bits (71), Expect = 1.4
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFG----GSGGG-------RGGASGPGSG 50
P A+AA+ + + G + G SG G G GGG ++G G G
Sbjct: 59 PIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGG 118
Query: 51 SGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTA 91
GG G S TP S+ S S + S+ S++
Sbjct: 119 GGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSS 159
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 45.4 bits (106), Expect = 1e-04
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRM 61
P G A+SG L E S AA + S GG GGG G G SG+GG GG G
Sbjct: 42 PSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGG 101
Query: 62 SLTPKELSSLLSIISEEAGGG 82
S + L+ S +GGG
Sbjct: 102 S----NCNPNLAAASNGSGGG 118
Score = 32.0 bits (71), Expect = 1.4
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFG----GSGGG-------RGGASGPGSG 50
P A+AA+ + + G + G SG G G GGG ++G G G
Sbjct: 59 PIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGG 118
Query: 51 SGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTA 91
GG G S TP S+ S S + S+ S++
Sbjct: 119 GGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSS 159
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 45.4 bits (106), Expect = 1e-04
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRM 61
P G A+SG L E S AA + S GG GGG G G SG+GG GG G
Sbjct: 42 PSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGG 101
Query: 62 SLTPKELSSLLSIISEEAGGG 82
S + L+ S +GGG
Sbjct: 102 S----NCNPNLAAASNGSGGG 118
Score = 32.0 bits (71), Expect = 1.4
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFG----GSGGG-------RGGASGPGSG 50
P A+AA+ + + G + G SG G G GGG ++G G G
Sbjct: 59 PIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGG 118
Query: 51 SGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTA 91
GG G S TP S+ S S + S+ S++
Sbjct: 119 GGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSS 159
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 43.9 bits (102), Expect = 3e-04
Identities = 32/79 (40%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 10 SGRLLTAAEQRGSREA--------AGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRM 61
SG L A E G EA A A+ G GG GGG GG G G G GG GG AG
Sbjct: 31 SGPLRGAKEPTGCTEAGRDDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGG 90
Query: 62 SLTPKELSSLLSIISEEAG 80
+EL + S E G
Sbjct: 91 RSPVRELDMGAAERSREPG 109
Score = 40.0 bits (92), Expect = 0.005
Identities = 21/59 (35%), Positives = 24/59 (40%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGR 60
P GA +G + R S + G GG GGG GG G G G G G GR
Sbjct: 33 PLRGAKEPTGCTEAGRDDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGR 91
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 30 SRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGG 82
SR G GG GGG GG G GSG GG GG AG +++ + + AGGG
Sbjct: 244 SRPGAGGGGGGGGGGGG-GSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 41.2 bits (95), Expect = 0.002
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 35 GGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAF 92
GG GGG GG G G G GG G AG ++ + + GGG + G S +
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGY 307
Score = 39.3 bits (90), Expect = 0.009
Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 3 GGGASAA-SGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG----GPGGP 57
GGGA A +G AA + AAG G+GGS G G S P G GPGG
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGG- 326
Query: 58 AGRMSLTPKELSSLLSIISEEAGGGSTFEG 87
G SL+ S AGG F G
Sbjct: 327 GGAASLSKAAAGS-------AAGGFQRFAG 349
Score = 32.7 bits (73), Expect = 0.80
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG---GPGGPAG 59
GGG+ G A G+ A +A+ + GGG GG G +G G P G
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
Query: 60 RMSLTP--KELSSLLSIISEEAGGG 82
M + P +SL + A GG
Sbjct: 319 GMMMGPGGGGAASLSKAAAGSAAGG 343
Score = 30.0 bits (66), Expect = 5.2
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 19/76 (25%)
Query: 21 GSREAAGSASRSGFGGSGGGRG-GASGPGSGS-------------GGPGGPAGRMSLTPK 66
G G G GG GGG G GA G G+G+ GG GG G S
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
Query: 67 ELSSLLSIISEEAGGG 82
LSS + GGG
Sbjct: 309 VLSS-----PRQQGGG 319
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 30 SRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGG 82
SR G GG GGG GG G GSG GG GG AG +++ + + AGGG
Sbjct: 244 SRPGAGGGGGGGGGGGG-GSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 41.2 bits (95), Expect = 0.002
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 35 GGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAF 92
GG GGG GG G G G GG G AG ++ + + GGG + G S +
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGY 307
Score = 39.3 bits (90), Expect = 0.009
Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 3 GGGASAA-SGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG----GPGGP 57
GGGA A +G AA + AAG G+GGS G G S P G GPGG
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGG- 326
Query: 58 AGRMSLTPKELSSLLSIISEEAGGGSTFEG 87
G SL+ S AGG F G
Sbjct: 327 GGAASLSKAAAGS-------AAGGFQRFAG 349
Score = 32.7 bits (73), Expect = 0.80
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG---GPGGPAG 59
GGG+ G A G+ A +A+ + GGG GG G +G G P G
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
Query: 60 RMSLTP--KELSSLLSIISEEAGGG 82
M + P +SL + A GG
Sbjct: 319 GMMMGPGGGGAASLSKAAAGSAAGG 343
Score = 30.0 bits (66), Expect = 5.2
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 19/76 (25%)
Query: 21 GSREAAGSASRSGFGGSGGGRG-GASGPGSGS-------------GGPGGPAGRMSLTPK 66
G G G GG GGG G GA G G+G+ GG GG G S
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
Query: 67 ELSSLLSIISEEAGGG 82
LSS + GGG
Sbjct: 309 VLSS-----PRQQGGG 319
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 30 SRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGG 82
SR G GG GGG GG G GSG GG GG AG +++ + + AGGG
Sbjct: 244 SRPGAGGGGGGGGGGGG-GSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 41.2 bits (95), Expect = 0.002
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 35 GGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAF 92
GG GGG GG G G G GG G AG ++ + + GGG + G S +
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGY 307
Score = 39.3 bits (90), Expect = 0.009
Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 3 GGGASAA-SGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG----GPGGP 57
GGGA A +G AA + AAG G+GGS G G S P G GPGG
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGG- 326
Query: 58 AGRMSLTPKELSSLLSIISEEAGGGSTFEG 87
G SL+ S AGG F G
Sbjct: 327 GGAASLSKAAAGS-------AAGGFQRFAG 349
Score = 32.7 bits (73), Expect = 0.80
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG---GPGGPAG 59
GGG+ G A G+ A +A+ + GGG GG G +G G P G
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
Query: 60 RMSLTP--KELSSLLSIISEEAGGG 82
M + P +SL + A GG
Sbjct: 319 GMMMGPGGGGAASLSKAAAGSAAGG 343
Score = 30.0 bits (66), Expect = 5.2
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 19/76 (25%)
Query: 21 GSREAAGSASRSGFGGSGGGRG-GASGPGSGS-------------GGPGGPAGRMSLTPK 66
G G G GG GGG G GA G G+G+ GG GG G S
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
Query: 67 ELSSLLSIISEEAGGG 82
LSS + GGG
Sbjct: 309 VLSS-----PRQQGGG 319
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 43.1 bits (100), Expect = 6e-04
Identities = 19/28 (67%), Positives = 19/28 (67%)
Query: 33 GFGGSGGGRGGASGPGSGSGGPGGPAGR 60
GFGG GGGRGG G G G GG GG GR
Sbjct: 652 GFGGRGGGRGGFGGRGGGRGGRGGFGGR 679
Score = 38.5 bits (88), Expect = 0.015
Identities = 24/58 (41%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGR 60
GGG GR RG R G R GFGG GG RG G G GG P G+
Sbjct: 657 GGGRGGFGGR----GGGRGGRGGFGGRGRGGFGGRGGFRG-----GRGGGGDHKPQGK 705
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/67 (46%), Positives = 34/67 (50%), Gaps = 14/67 (20%)
Query: 4 GGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSL 63
GGA+ SG GS GS S SG GG GGG GG GSG GG G P G
Sbjct: 11 GGAALGSG---------GSLGHPGSGSGSGGGGGGGGGGG----GSGGGGGGAPGGLQHE 57
Query: 64 TPKELSS 70
T +EL+S
Sbjct: 58 T-QELAS 63
Score = 30.0 bits (66), Expect = 5.2
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 17 AEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
A++ E G+A G GGS G G SG GSG GG GG G
Sbjct: 2 ADRDSGSEQGGAAL--GSGGSLGHPG--SGSGSGGGGGGGGGG 40
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 43.1 bits (100), Expect = 6e-04
Identities = 64/283 (22%), Positives = 89/283 (31%), Gaps = 54/283 (19%)
Query: 25 AAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGST 84
A GFGG GG GG G G GS G GGP G L + L S + + G +
Sbjct: 65 AGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGS 124
Query: 85 FEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANP 144
+P LLP + +A + P
Sbjct: 125 -----------------------------RPPLLPPGGRSTSAKPF------SPPSGPGR 149
Query: 145 F-AASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAP--------PRE 195
F S H P P R P RP + I PP + +P P
Sbjct: 150 FPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGG 209
Query: 196 LFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFP-----SILSDPDPD 250
+ +P GN G + + G + + S P ++ P ++ P P
Sbjct: 210 PRQPSPGPTPPPFPGNRGTA--LGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPP 267
Query: 251 SSNSGFDSSVASQ-ITEALVSGPKPPIESHFRPEFI--RPPPP 290
G S+ + + KPP+ S RP PPPP
Sbjct: 268 PPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPP 310
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 43.1 bits (100), Expect = 6e-04
Identities = 64/283 (22%), Positives = 89/283 (31%), Gaps = 54/283 (19%)
Query: 25 AAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGST 84
A GFGG GG GG G G GS G GGP G L + L S + + G +
Sbjct: 65 AGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGS 124
Query: 85 FEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANP 144
+P LLP + +A + P
Sbjct: 125 -----------------------------RPPLLPPGGRSTSAKPF------SPPSGPGR 149
Query: 145 F-AASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAP--------PRE 195
F S H P P R P RP + I PP + +P P
Sbjct: 150 FPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGG 209
Query: 196 LFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFP-----SILSDPDPD 250
+ +P GN G + + G + + S P ++ P ++ P P
Sbjct: 210 PRQPSPGPTPPPFPGNRGTA--LGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPP 267
Query: 251 SSNSGFDSSVASQ-ITEALVSGPKPPIESHFRPEFI--RPPPP 290
G S+ + + KPP+ S RP PPPP
Sbjct: 268 PPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPP 310
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 42.7 bits (99), Expect = 8e-04
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGF--GGSGGGRGGAS-GPGSGSGGPGGPAG 59
GG + + G + G + GS S SG GGSGGG GG+S G GSG G GG G
Sbjct: 555 GGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIG 614
Query: 60 RMSLTPKELSSLLSIISEEAGGGSTFEGLSTAF 92
+ + S +GG S+ + +ST +
Sbjct: 615 GRGSSSGGVKS--------SGGSSSVKFVSTTY 639
Score = 41.2 bits (95), Expect = 0.002
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMS 62
GGG S+ S ++ R + S RSG GGGR + G G GS G GG G S
Sbjct: 14 GGGFSSGSAGIINYQR----RTTSSSTRRSG---GGGGRFSSCGGGGGSFGAGGGFGSRS 66
Query: 63 LTPKELSSLLSIISEEAGG-GSTFEG 87
L S +SI GG GS F G
Sbjct: 67 LVNLGGSKSISISVARGGGRGSGFGG 92
Score = 36.6 bits (83), Expect = 0.056
Identities = 18/39 (46%), Positives = 18/39 (46%)
Query: 21 GSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
G G GFGG G G GG G G G GG GG G
Sbjct: 106 GGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGGGYG 144
Score = 36.6 bits (83), Expect = 0.056
Identities = 32/89 (35%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRG--GASGPGSGSGGP-----G 55
GGG SG GS +G S GG GGGRG G+ G GSGG G
Sbjct: 520 GGGGGYGSG---------GSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGG 570
Query: 56 GPAGRMSLTPKELSSLLSIISEEAGGGST 84
G G S S S GGGS+
Sbjct: 571 GGGGHGSYGSGSSSGGYRGGSGGGGGGSS 599
Score = 36.2 bits (82), Expect = 0.073
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGG 56
GGG + G G G GFGG G G GG G GSG GG GG
Sbjct: 83 GGGRGSGFG-----GGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGG 131
Score = 35.8 bits (81), Expect = 0.095
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGG 56
GGG + S L ++ A G SGFGG GG GG G G G GG GG
Sbjct: 59 GGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGG-GGFGGGGFGGGGFGG 111
Score = 35.4 bits (80), Expect = 0.12
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFG--GSGGGRGG--------ASG---PGS 49
GGG+ + G RGS + GS+ SG G GSGGG GG +SG GS
Sbjct: 535 GGGSYGSGGG---GGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGS 591
Query: 50 GSGGPGGPAGRMS 62
G GG G GR S
Sbjct: 592 GGGGGGSSGGRGS 604
Score = 33.9 bits (76), Expect = 0.36
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 26 AGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
+G SR G GG G G + G G GS G GG G
Sbjct: 513 SGGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGG 546
Score = 32.7 bits (73), Expect = 0.80
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 27 GSASRSGFGGSGGGRGGASGPGSGSGGPGGP 57
G GFG GGG GG G G GG GP
Sbjct: 115 GGGGFGGFGSGGGGFGGGGFGGGGYGGGYGP 145
Score = 31.2 bits (69), Expect = 2.3
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 21 GSREAAGSASRSG---FGGSGG--GRGGASGPGSGSGGPGG 56
GSR G SG +G GG G GG G G GS G GG
Sbjct: 516 GSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGG 556
Score = 30.4 bits (67), Expect = 4.0
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 21 GSREAAGSASRSGFGGSG---GGRGGASGPGSGSGGPGGPAG 59
G G GFGG G GG GG G GSGG G G
Sbjct: 91 GGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGG 132
Score = 30.0 bits (66), Expect = 5.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 21 GSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGG 56
G G G GGS G GG S GSG GG GG
Sbjct: 514 GGGSRGGGGGGYGSGGSSYGSGGGS-YGSGGGGGGG 548
Score = 29.3 bits (64), Expect = 8.9
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 13 LLTAAEQRGSREAAG----SASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
LL E R S E A S S S SGGG G G G GSGG +G
Sbjct: 485 LLEGEESRMSGECAPNVSVSVSTSHTTISGGGSRGGGGGGYGSGGSSYGSG 535
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 42.7 bits (99), Expect = 8e-04
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG-GPGGPAGR 60
P GG++ S +++ + AA +A+ GG GGG GG G G G+G G G G
Sbjct: 380 PSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGC 439
Query: 61 MSLTPKELSSLL 72
+ P+ S L
Sbjct: 440 SAAAPRSESGFL 451
Score = 33.5 bits (75), Expect = 0.47
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 6 ASAASGRLLTAAEQRGSREAAGSASRSGFGGSGG-GRGGASGPGSGSGGPGGPAGRMSLT 64
+ +A+ AA GSR G G GG GG G GG S G + P +G + +
Sbjct: 395 SQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYS 454
Query: 65 PKELS 69
LS
Sbjct: 455 AAVLS 459
Score = 32.7 bits (73), Expect = 0.80
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 4 GGASAASGRLLTAAEQRGSREAAG---SASRSGFG----GSGGGRGGASGPGSGSGGPGG 56
GG AA + S AAG SAS SG G GSGG G A+ GSGSG
Sbjct: 129 GGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGADQV 188
Query: 57 PAGRMSLTPKELSSL 71
R + T ++++ L
Sbjct: 189 RRYRTAFTREQIARL 203
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 42.7 bits (99), Expect = 8e-04
Identities = 26/49 (53%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 26 AGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSI 74
+G SGFGG GG GG+ G G GSGG GG G S LSSLLS+
Sbjct: 24 SGKRLSSGFGGGGG--GGSGGGGGGSGGGGGGLGSSS---HPLSSLLSM 67
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 42.4 bits (98), Expect = 0.001
Identities = 34/83 (40%), Positives = 37/83 (44%), Gaps = 19/83 (22%)
Query: 2 PGGGASAASGRLLTA--AEQRGSREAAGSA---SRSGFGGSGGGRG---------GAS-- 45
P GG SGR T+ AE G G S SG GG+GGG+ GAS
Sbjct: 6 PSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVGASSS 65
Query: 46 --GPG-SGSGGPGGPAGRMSLTP 65
GPG SG GG GGP S P
Sbjct: 66 GGGPGGSGGGGSGGPGAGTSFPP 88
Score = 37.0 bits (84), Expect = 0.043
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG--GPGGPAG 59
PGG AS G A G+ AS SG G G G GG+ GPG+G+ PG G
Sbjct: 36 PGGSASGPGGTGGGKASV-GAMGGGVGASSSGGGPGGSGGGGSGGPGAGTSFPPPGVKLG 94
Query: 60 RMS 62
R S
Sbjct: 95 RDS 97
Score = 35.8 bits (81), Expect = 0.095
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 12/47 (25%)
Query: 25 AAGSASRSGFGGS------------GGGRGGASGPGSGSGGPGGPAG 59
+ G S G GGS GGG GG GPG + GPGG G
Sbjct: 2 SGGGPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGG 48
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG-- 59
PG ++ S L+ +GS A + + G GG+ G GGA+G G GG GG AG
Sbjct: 297 PGFASTDISMYTLSRDPSKGSVAAGLAGAGGGGGGAVGAFGGAAGGAGGGGGGGGGAGAE 356
Query: 60 RMSLTPKELSSLLSIISEEAGGGST 84
R +L + +EAGGG T
Sbjct: 357 RDRGGASGFLTLHNAFPKEAGGGVT 381
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
GGG SG + GS + G S SG GGSGGG GG SG G G GG +G
Sbjct: 503 GGGYGGGSG------SRGGSGGSYGGGSGSG-GGSGGGYGGGSGGGHSGGSGGGHSG 552
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
GGG S SG G +G S G+GG G RGG+ G G G GG +G
Sbjct: 547 GGGHSGGSGG------NYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESG 597
Score = 40.8 bits (94), Expect = 0.003
Identities = 24/41 (58%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 20 RGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGP-GGPAG 59
RGSR GS G GGSGGG GG SG GSGG GG +G
Sbjct: 487 RGSR--GGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSG 525
Score = 40.4 bits (93), Expect = 0.004
Identities = 35/88 (39%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 3 GGGASAAS--GRLLTAAEQRGSREAAGSASRSGFGGS-GGGRGGASGPGSGSG-----GP 54
GGG SA+S G + G G +S GFGG GGG GG G G GSG G
Sbjct: 78 GGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGF 137
Query: 55 GGPAGRMS---LTPKELSSLLSIISEEA 79
GG AG LT E S++ + S A
Sbjct: 138 GGGAGGGDGGILTANEKSTMQELNSRLA 165
Score = 40.0 bits (92), Expect = 0.005
Identities = 20/39 (51%), Positives = 21/39 (53%)
Query: 21 GSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
GS + G SR G GGS GG G G G GSG GG G
Sbjct: 480 GSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGG 518
Score = 38.9 bits (89), Expect = 0.011
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGS-GGGRGGASGPGSGSGGPGGPAG 59
GGG+ G + G GS S G GG GGG GG GSG G GG G
Sbjct: 499 GGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGG 556
Score = 37.7 bits (86), Expect = 0.025
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGP-GGPAG 59
GGG+ + G G + GS GGSGG GG SG G GSGG GG +G
Sbjct: 521 GGGSGSGGGSGGGYGGGSGGGHSGGSGGGHS-GGSGGNYGGGSGSGGGSGGGYGGGSG 577
Score = 36.6 bits (83), Expect = 0.056
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 19/71 (26%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGS----------- 51
GGG+ + G G GS SR G GGS GG G G GS
Sbjct: 559 GGGSGSGGGS--------GGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSG 610
Query: 52 GGPGGPAGRMS 62
GG GG +G+ S
Sbjct: 611 GGYGGGSGKSS 621
Score = 36.2 bits (82), Expect = 0.073
Identities = 31/96 (32%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGG---GRGGASGPGSGS-GGPGGPA 58
GGG+ G GS S +GG G G GG G GSGS GG GG
Sbjct: 527 GGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSH 586
Query: 59 GRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHH 94
G S E E +G G + G S H
Sbjct: 587 GGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKSSH 622
Score = 34.3 bits (77), Expect = 0.28
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 13 LLTAAEQRGSREAAGSASRSGFGGSGG--GRG--GASGPGSGSGGPGGPAG 59
LL ++ AG G GGSGG GRG G SG G GG GG G
Sbjct: 457 LLEGGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYG 507
Score = 34.3 bits (77), Expect = 0.28
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 4 GGASAASGRLLTAAEQRGSREAAGSASRSGFG-GSGGGRGGASGPGSGSGGP-GGPAG 59
GG+ R + G G SG GSGG GG SG G GSGG GG +G
Sbjct: 482 GGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSG 539
Score = 33.9 bits (76), Expect = 0.36
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 4 GGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGG--PGGPAG 59
GG+ + G + G + G + S GGSG G G G G GSGG GG G
Sbjct: 491 GGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGG 548
Score = 33.1 bits (74), Expect = 0.62
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGS-----ASRSGFGGS-----GGGRGGASGPGSGSG 52
GGG SG + ++ R S G +S SG+GG G G GG+ G G G
Sbjct: 17 GGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGG 76
Query: 53 GPGG 56
GG
Sbjct: 77 SGGG 80
Score = 32.7 bits (73), Expect = 0.80
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGAS---GPGSGSGGPGGPAG 59
GGG ++S + + R GS S GGSGGG +S G G GS G GG +G
Sbjct: 43 GGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASG 102
Score = 32.7 bits (73), Expect = 0.80
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSG-GGRGGASGPGSGSGGPGG 56
G G S G G +G G GG GG GG G GSGSGG G
Sbjct: 515 GSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSG 569
Score = 32.0 bits (71), Expect = 1.4
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGR----GGASGPGSGSGGPGG 56
G G SG + GS + G G G G G GG+ G GSGSGG G
Sbjct: 474 GLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSG 531
Score = 31.6 bits (70), Expect = 1.8
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGG------SGGGRGGASGPGSGS 51
GGG SG + G G S +GG SGGG GG SG S S
Sbjct: 569 GGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKSSHS 623
Score = 30.8 bits (68), Expect = 3.1
Identities = 28/65 (43%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSA---SRSGFGGSGGGR----GGASGPG-SGSGGP 54
GGG+S GR G GS S S GG GG GGASG G S SGG
Sbjct: 54 GGGSSRVCGR--GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGF 111
Query: 55 GGPAG 59
GG G
Sbjct: 112 GGGFG 116
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRM 61
PG A A +A+ S A G G GG GGGR +S SGG G A R
Sbjct: 34 PGSSAPIAP----SASSPSSSSNAGGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAMRR 89
Query: 62 SLTPKELSSLLSIISE------EAGGGSTFEGLSTAFHHY 95
+ P S++ + E EA S + HH+
Sbjct: 90 ACLPTPPSNIFGGLDESLLARAEALAAVDIVSQSKSHHHH 129
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 41.6 bits (96), Expect = 0.002
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 10 SGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGG 56
SG + A+ A+ S+ G GG GGG GG G GSGS G GG
Sbjct: 361 SGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGG 407
Score = 40.0 bits (92), Expect = 0.005
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 26 AGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
AG+++ SG GGSGGG GG G G G G G G
Sbjct: 374 AGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGG 407
Score = 37.4 bits (85), Expect = 0.033
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 6 ASAASGRL---LTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
A A+SG + ++ ++ S + G+ + + GG G G GG G G G GG G G
Sbjct: 349 AVASSGSMPMYVSGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGG 405
Score = 35.4 bits (80), Expect = 0.12
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 15 TAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGG 56
T+ S + G S G GG GGG GG SG G G G
Sbjct: 370 TSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAG 411
Score = 34.3 bits (77), Expect = 0.28
Identities = 18/48 (37%), Positives = 20/48 (41%)
Query: 5 GASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG 52
G+ + T A S GS G GG GGG G S G GSG
Sbjct: 362 GSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSG 409
Score = 32.7 bits (73), Expect = 0.80
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSG 52
G GAS +SG +G G GG GGG G G GSG+G
Sbjct: 373 GAGASNSSGG-----------GGSGGGGGGGGGGGGGGSGSTGGGGSGAG 411
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 41.6 bits (96), Expect = 0.002
Identities = 19/37 (51%), Positives = 20/37 (54%)
Query: 20 RGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGG 56
RG R G R G+GG G G GG G SG GG GG
Sbjct: 383 RGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 419
Score = 36.6 bits (83), Expect = 0.056
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGAS----GPGSGSGGPGGPA 58
GGG S G+ + RG R GS G GG G R G G G GG GG
Sbjct: 201 GGGGSGGYGQ-----QDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMG 255
Query: 59 G 59
G
Sbjct: 256 G 256
Score = 36.2 bits (82), Expect = 0.073
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGG------GRGGASGPGSGSGGPGG 56
GGG + + GS G+ +SG GGSGG G G G G G GG GG
Sbjct: 171 GGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGG 230
Query: 57 PAGRMS 62
R S
Sbjct: 231 GYNRSS 236
Score = 35.0 bits (79), Expect = 0.16
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 2 PGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGG 56
PGGG + ++RG R G R G+ G GG RGG G G G G GG
Sbjct: 455 PGGGPGGSHMGGNYGDDRRGGR---GGYDRGGYRGRGGDRGGFRG-GRGGGDRGG 505
Score = 32.7 bits (73), Expect = 0.80
Identities = 17/40 (42%), Positives = 17/40 (42%)
Query: 20 RGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
RG G R G G GG GG SG G G P G G
Sbjct: 377 RGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGG 416
Score = 32.0 bits (71), Expect = 1.4
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGS----GGG--------RGGASGPGSG 50
GGG G Q S ++G S G+G GGG RGG GSG
Sbjct: 167 GGGGGGGGGNY----GQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSG 222
Query: 51 SGGPGGPAG 59
GG GG G
Sbjct: 223 GGGGGGGGG 231
Score = 30.4 bits (67), Expect = 4.0
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 30 SRSGFGGSGG-GRGGASGPGSGSGGPGGPAGR 60
+R G G GG GRGG G G GG G GR
Sbjct: 376 NRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGR 407
Score = 29.6 bits (65), Expect = 6.8
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 16/52 (30%)
Query: 21 GSREAAGSASRSGFGGSGGGR----------GGASGPG------SGSGGPGG 56
G + S+S G GG GGG GG SG G SG GG GG
Sbjct: 156 GQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGG 207
>gi|33620755 YEATS domain containing 2 [Homo sapiens]
Length = 1422
Score = 41.6 bits (96), Expect = 0.002
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 19 QRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
Q GS + GS + G GG GGG G SG G +GG GG AG
Sbjct: 792 QSGSAASGGSGAGGG-GGGGGGGGSGSGGGGSTGGGGGTAG 831
Score = 37.7 bits (86), Expect = 0.025
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 10 SGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPG-----GPAG 59
+ L + + G A G G GGSG G GG++G G G+ G G GP G
Sbjct: 788 NANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGGGTAGGGTQSTAGPGG 842
Score = 35.0 bits (79), Expect = 0.16
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 6 ASAASGRLLTAAEQRGSREAAGSASRSGFGGSG--GGRGGASGPGSGS-GGPGGPAGRMS 62
A+ SG + G G SG GG G GG GG +G G+ S GPGG + ++
Sbjct: 789 ANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGGGTAGGGTQSTAGPGGISQHLT 848
Query: 63 LT 64
T
Sbjct: 849 YT 850
Score = 32.3 bits (72), Expect = 1.1
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 8 AASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
+ G+LL + R + +SG SGG G G G G GG G G
Sbjct: 769 SGKGKLLLIPQGAILRATNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGG 820
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/53 (41%), Positives = 25/53 (47%)
Query: 7 SAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
S+ S L+ A G+ G A GG G G GG G G G GG GGP G
Sbjct: 121 SSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGG 173
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/53 (45%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 4 GGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGG 56
GGA AA+G G G G GG GG GG GPG G GGPGG
Sbjct: 132 GGAGAAAGG---GGAHDGPGGGGGPGGGGGPGGGPGG-GGGGGPGGGGGGPGG 180
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 28 SASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEG 87
+A G GG GGG GG G G G GG G P L ++ S++ ++ G G G
Sbjct: 63 TALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKP--SVVVQQGGRGDELHG 120
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 41.2 bits (95), Expect = 0.002
Identities = 20/40 (50%), Positives = 20/40 (50%)
Query: 20 RGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
RG G G GG GGGRGG G G G GG GG G
Sbjct: 335 RGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGG 374
Score = 40.4 bits (93), Expect = 0.004
Identities = 18/36 (50%), Positives = 19/36 (52%)
Query: 21 GSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGG 56
G G R G+GG GGG GG G G G GG GG
Sbjct: 346 GRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGG 381
Score = 37.4 bits (85), Expect = 0.033
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 GSASRSGFGGSGGGRG-GASGPGSGSGGPGGPAG 59
G R G+GG GGG G G G G G GG GG G
Sbjct: 331 GGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGG 364
Score = 36.6 bits (83), Expect = 0.056
Identities = 19/42 (45%), Positives = 19/42 (45%)
Query: 18 EQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
E G R G G G GGG GG G G G GG GG G
Sbjct: 330 EGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGG 371
Score = 36.2 bits (82), Expect = 0.073
Identities = 18/39 (46%), Positives = 18/39 (46%)
Query: 21 GSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
G G G GG GGG GG G G G GG GG G
Sbjct: 343 GGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGG 381
Score = 35.8 bits (81), Expect = 0.095
Identities = 18/40 (45%), Positives = 18/40 (45%)
Query: 20 RGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
RG G G GG G G GG G G G GG GG G
Sbjct: 347 RGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGG 386
Score = 35.8 bits (81), Expect = 0.095
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGS-ASRSGFGGSG--GGRGGASGPGSGSGGPGGPAG 59
GGG G RG + G R G+GG G GGRG G G GG GG G
Sbjct: 367 GGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGG 426
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGR--GGASGPGSGSGGPGG 56
GGG G + G G R G+GG G G GG G G G GG GG
Sbjct: 377 GGGGGGGRGGFQGRGDYGGR---GGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGG 429
Score = 31.6 bits (70), Expect = 1.8
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 35 GGSGGGRGGASGPGSGSGGPGGPAGR 60
GG G G G G G G GG GG GR
Sbjct: 331 GGGGRGGWGGGGGGGGRGGGGGGGGR 356
Score = 31.2 bits (69), Expect = 2.3
Identities = 25/70 (35%), Positives = 25/70 (35%), Gaps = 16/70 (22%)
Query: 3 GGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSG-------GGRGGASGPG-----SG 50
GGG G RG G G GG G GGRGG G G G
Sbjct: 343 GGGGRGGGG----GGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGG 398
Query: 51 SGGPGGPAGR 60
GG GG GR
Sbjct: 399 YGGRGGYGGR 408
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 40.8 bits (94), Expect = 0.003
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 17 AEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIIS 76
AE A RSG GGS GG G G+G+GG GGP G ++ L LL
Sbjct: 27 AEDPERPNAGAGGGRSGGGGSSVSGGGGGG-GAGAGGCGGPGGALTRRAVTLRVLLKDAL 85
Query: 77 EEAGGG 82
E G G
Sbjct: 86 LEPGAG 91
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 40.8 bits (94), Expect = 0.003
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 17 AEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIIS 76
AE A RSG GGS GG G G+G+GG GGP G ++ L LL
Sbjct: 27 AEDPERPNAGAGGGRSGGGGSSVSGGGGGG-GAGAGGCGGPGGALTRRAVTLRVLLKDAL 85
Query: 77 EEAGGG 82
E G G
Sbjct: 86 LEPGAG 91
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 40.8 bits (94), Expect = 0.003
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 25 AAGSASRSGFGGSGGGRGGASGPGSG-SGGPGGPAGRMSLTPKELSSLLSI 74
+ G G GG+GGG GG +G G G +GG GG G S P E S+ +
Sbjct: 32 SGGGNGAGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGGSRAPPEELSMFQL 82
Score = 37.7 bits (86), Expect = 0.025
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 12 RLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELS 69
R + A G A G G G G G GG G+G GG GG P+ELS
Sbjct: 25 RSILLASSGGGNGAGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGGSRA----PPEELS 78
Score = 32.7 bits (73), Expect = 0.80
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 13 LLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSL--------T 64
L ++ G+ G+ SG G GG G G G GG P +S+ +
Sbjct: 29 LASSGGGNGAGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGGSRAPPEELSMFQLPTLNFS 88
Query: 65 PKELSSLLSIISE 77
P++++S+ + E
Sbjct: 89 PEQVASVCETLEE 101
Score = 29.3 bits (64), Expect = 8.9
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 26 AGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
A S RS S GG GA G G GG GG G
Sbjct: 20 ADSHHRSILLASSGGGNGAGGGGGAGGGSGGGNG 53
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,615,563
Number of Sequences: 37866
Number of extensions: 1243644
Number of successful extensions: 20175
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 384
Number of HSP's that attempted gapping in prelim test: 10362
Number of HSP's gapped (non-prelim): 5570
length of query: 510
length of database: 18,247,518
effective HSP length: 107
effective length of query: 403
effective length of database: 14,195,856
effective search space: 5720929968
effective search space used: 5720929968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.