Guide to the Human Genome
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Name: SIX3 Sequence: fasta or formatted (332aa) NCBI GI: 4885597
Description:

sine oculis homeobox homolog 3

Referenced in:

Homeobox and Related Proteins
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         30           4
 C cysteine            1.5          5           1
 D aspartate           3.3         11           1
 E glutamate           6.6         22           2
 F phenylalanine       3.6         12           1
 G glycine            13.3         44           7
 H histidine           3.6         12           2
 I isoleucine          2.4          8           1
 K lysine              4.2         14           2
 L leucine             9.0         30           2
 M methionine          1.2          4           1
 N asparagine          3.3         11           1
 P proline             6.3         21           2
 Q glutamine           3.3         11           1
 R arginine            7.2         24           2
 S serine              9.3         31           2
 T threonine           5.7         19           2
 V valine              3.6         12           2
 W tryptophan          1.5          5           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sine oculis homeobox homolog 3 
SIX6                  0.585   SIX homeobox 6 
SIX2                  0.400   SIX homeobox 2 
SIX1                  0.386   SIX homeobox 1 
SIX4                  0.302   sine oculis homeobox homolog 4 
SIX5                  0.300   sine oculis homeobox homolog 5 
LRCH2                 0.065   leucine-rich repeats and calponin homology (CH) dom...
SHOX2                 0.062   short stature homeobox 2 isoform a 
ARID1B                0.061   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.061   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.061   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
POU4F1                0.056   POU domain, class 4, transcription factor 1 
FAM98B                0.055   family with sequence similarity 98, member B isofor...
PBX2                  0.055   pre-B-cell leukemia homeobox 2 
CAPNS1                0.055   calpain, small subunit 1 
CAPNS1                0.055   calpain, small subunit 1 
HOXB3                 0.053   homeobox B3 
ZIC2                  0.053   zinc finger protein of the cerebellum 2 
KRT9                  0.053   keratin 9 
MAF                   0.053   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.053   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
YEATS2                0.052   YEATS domain containing 2 
RALY                  0.052   RNA binding protein (autoantigenic, hnRNP-associated ...
RALY                  0.052   RNA binding protein (autoantigenic, hnRNP-associated...
PBX1                  0.052   pre-B-cell leukemia homeobox 1 
KRT1                  0.050   keratin 1 
RFX1                  0.050   regulatory factor X1 
DACH1                 0.050   dachshund homolog 1 isoform b 
DACH1                 0.050   dachshund homolog 1 isoform a 
DACH1                 0.050   dachshund homolog 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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