Guide to the Human Genome
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Name: ANKS1A Sequence: fasta or formatted (1134aa) NCBI GI: 140161500
Description:

ankyrin repeat and sterile alpha motif domain containing 1

Referenced in:

Ankyrin Family
Additional Membrane Functions
Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         89           2
 C cysteine            1.5         17           1
 D aspartate           6.0         68           2
 E glutamate           7.1         80           4
 F phenylalanine       1.7         19           1
 G glycine             7.7         87           7
 H histidine           3.8         43           2
 I isoleucine          3.5         40           2
 K lysine              5.8         66           2
 L leucine            10.4        118           3
 M methionine          1.7         19           1
 N asparagine          3.1         35           2
 P proline             6.5         74           4
 Q glutamine           4.9         55           2
 R arginine            4.9         56           3
 S serine             10.7        121           4
 T threonine           5.1         58           2
 V valine              5.1         58           2
 W tryptophan          0.7          8           1
 Y tyrosine            2.0         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat and sterile alpha motif domain conta... 
ANKS1B                0.242   cajalin 2 isoform a 
ANKS1B                0.213   cajalin 2 isoform b 
ANKS1B                0.195   cajalin 2 isoform c 
CASKIN2               0.081   cask-interacting protein 2 isoform a 
CASKIN1               0.073   CASK interacting protein 1 
CASKIN2               0.063   cask-interacting protein 2 isoform b 
ANK3                  0.050   ankyrin 3 isoform 1 
RIPK4                 0.045   ankyrin repeat domain 3 
ANK1                  0.045   ankyrin 1 isoform 9 
ANK1                  0.045   ankyrin 1 isoform 1 
ANK1                  0.045   ankyrin 1 isoform 3 
ANK1                  0.045   ankyrin 1 isoform 2 
ANK1                  0.045   ankyrin 1 isoform 4 
ANK2                  0.044   ankyrin 2 isoform 3 
ANK2                  0.044   ankyrin 2 isoform 2 
ANK2                  0.044   ankyrin 2 isoform 1 
ANKRD28               0.041   ankyrin repeat domain 28 
ESPN                  0.041   espin 
TNNI3K                0.040   TNNI3 interacting kinase isoform b 
TNNI3K                0.040   TNNI3 interacting kinase isoform a 
ANKK1                 0.039   ankyrin repeat and kinase domain containing 1 
ANKRD44               0.039   ankyrin repeat domain 44 
ANKRD17               0.039   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.039   ankyrin repeat domain protein 17 isoform b 
ANKHD1                0.039   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.039   ANKHD1-EIF4EBP3 protein 
DAPK1                 0.038   death-associated protein kinase 1 
ANKDD1A               0.038   ankyrin repeat and death domain containing 1A 
ANKRD50               0.037   ankyrin repeat domain 50 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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