Guide to the Human Genome
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Name: C2orf29 Sequence: fasta or formatted (510aa) NCBI GI: 188497630
Description:

hypothetical protein LOC55571

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         40           2
 C cysteine            1.2          6           1
 D aspartate           3.7         19           1
 E glutamate           6.5         33           2
 F phenylalanine       4.5         23           2
 G glycine             7.8         40           3
 H histidine           2.0         10           2
 I isoleucine          5.1         26           2
 K lysine              4.3         22           2
 L leucine            12.2         62           2
 M methionine          3.1         16           1
 N asparagine          2.7         14           2
 P proline             8.8         45           4
 Q glutamine           4.5         23           2
 R arginine            4.7         24           1
 S serine             10.6         54           2
 T threonine           4.3         22           2
 V valine              4.1         21           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55571 
BHLHE22               0.022   basic helix-loop-helix domain containing, class B, 5...
ZIC2                  0.021   zinc finger protein of the cerebellum 2 
DACH1                 0.020   dachshund homolog 1 isoform b 
DACH1                 0.020   dachshund homolog 1 isoform a 
DACH1                 0.020   dachshund homolog 1 isoform c 
SHOX2                 0.019   short stature homeobox 2 isoform a 
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
NCL                   0.018   nucleolin 
PURA                  0.018   purine-rich element binding protein A 
WIPF1                 0.018   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.018   WAS/WASL interacting protein family, member 1 
KRT1                  0.018   keratin 1 
EVX2                  0.018   even-skipped homeobox 2 
ANKS1A                0.018   ankyrin repeat and sterile alpha motif domain conta...
GSK3A                 0.017   glycogen synthase kinase 3 alpha 
CACNG8                0.017   voltage-dependent calcium channel gamma-8 subunit [H...
KRT9                  0.017   keratin 9 
POU4F2                0.017   Brn3b POU domain transcription factor 
RFX1                  0.017   regulatory factor X1 
FUS                   0.017   fusion (involved in t(12;16) in malignant liposarcoma...
YEATS2                0.017   YEATS domain containing 2 
POU4F1                0.017   POU domain, class 4, transcription factor 1 
POU3F2                0.016   POU domain, class 3, transcription factor 2 
FAM98B                0.016   family with sequence similarity 98, member B isofor...
MPND                  0.016   MPN domain containing isoform 2 
MPND                  0.016   MPN domain containing isoform 1 
SIX3                  0.016   sine oculis homeobox homolog 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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