Guide to the Human Genome
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Name: TMEM67 Sequence: fasta or formatted (995aa) NCBI GI: 187281580
Description:

meckelin isoform 1

Referenced in:

Planar Cell Polarity

Other entries for this name:
alt prot [914aa] meckelin isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         68           3
 C cysteine            3.1         31           1
 D aspartate           4.1         41           1
 E glutamate           4.6         46           2
 F phenylalanine       6.7         67           2
 G glycine             6.1         61           2
 H histidine           1.8         18           1
 I isoleucine          6.6         66           2
 K lysine              3.9         39           2
 L leucine            10.4        103           3
 M methionine          2.4         24           2
 N asparagine          5.7         57           2
 P proline             3.5         35           2
 Q glutamine           4.7         47           2
 R arginine            4.2         42           2
 S serine              7.8         78           4
 T threonine           5.3         53           2
 V valine              6.9         69           2
 W tryptophan          1.4         14           1
 Y tyrosine            3.6         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   meckelin isoform 1 
TMEM67                0.857   meckelin isoform 2 
LAMC1                 0.011   laminin, gamma 1 precursor 
FBN2                  0.009   fibrillin 2 precursor 
FBN3                  0.009   fibrillin 3 precursor 
MEGF9                 0.009   multiple EGF-like-domains 9 
LAMC3                 0.008   laminin, gamma 3 precursor 
EPHA1                 0.008   ephrin receptor EphA1 
FBN1                  0.007   fibrillin 1 precursor 
MUC2                  0.006   mucin 2 precursor 
LOC100294420          0.006   PREDICTED: similar to mucin 2 
LAMA4                 0.006   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.006   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.006   laminin, alpha 4 isoform 2 precursor 
CRB1                  0.006   crumbs homolog 1 precursor 
CRB2                  0.006   crumbs homolog 2 
LTBP1                 0.006   latent transforming growth factor beta binding prote...
LTBP1                 0.006   latent transforming growth factor beta binding prote...
LAMA2                 0.006   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.006   laminin alpha 2 subunit isoform a precursor 
DNER                  0.006   delta-notch-like EGF repeat-containing transmembran...
EPHB6                 0.006   ephrin receptor EphB6 precursor 
USH2A                 0.005   usherin isoform B 
USH2A                 0.005   usherin isoform A 
NOTCH1                0.005   notch1 preproprotein 
TNC                   0.005   tenascin C precursor 
EPHB2                 0.005   ephrin receptor EphB2 isoform 1 precursor 
EPHB2                 0.005   ephrin receptor EphB2 isoform 2 precursor 
STAB1                 0.005   stabilin 1 precursor 
TNXB                  0.005   tenascin XB isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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