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Search of human proteins with 113206026
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens] 306 3e-84
gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens] 299 7e-82
gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens] 215 1e-56
gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens] 160 3e-40
gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens] 160 3e-40
gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens] 160 3e-40
gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens] 105 1e-23
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 35 0.024
gi|240255432 hypothetical protein LOC100130988 [Homo sapiens] 30 0.76
gi|83367077 mucin 16 [Homo sapiens] 29 1.3
gi|46359075 zinc finger protein 423 [Homo sapiens] 29 1.3
gi|38788260 bromodomain PHD finger transcription factor isoform ... 29 1.3
gi|38788274 bromodomain PHD finger transcription factor isoform ... 29 1.3
gi|71725360 zinc finger protein 609 [Homo sapiens] 29 1.3
gi|60097902 filaggrin [Homo sapiens] 29 1.7
gi|117190342 PHD finger protein 2 [Homo sapiens] 29 1.7
gi|148727255 microtubule associated serine/threonine kinase fami... 29 1.7
gi|166295173 kin of IRRE like [Homo sapiens] 28 2.2
gi|145580634 V-set and transmembrane domain containing 1 precurs... 28 2.2
gi|42734375 ankyrin repeat and sterile alpha motif domain contai... 28 2.2
gi|61675704 hypothetical protein LOC347487 [Homo sapiens] 28 2.9
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 28 2.9
gi|34878709 paired box protein 2 isoform c [Homo sapiens] 28 2.9
gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member... 28 2.9
gi|115647981 glutamine and serine rich 1 [Homo sapiens] 28 3.8
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 27 5.0
gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens] 27 5.0
gi|28559039 mediator complex subunit 1 [Homo sapiens] 27 5.0
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 27 6.5
gi|23308699 transcription factor MAFB [Homo sapiens] 27 8.5
>gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens]
Length = 150
Score = 306 bits (785), Expect = 3e-84
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLED 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLED
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLED 60
Query: 61 PSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTD 120
PSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTD
Sbjct: 61 PSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTD 120
Query: 121 RSPYEKVSAGNGGSSLSYTNPAVAATSANL 150
RSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 121 RSPYEKVSAGNGGSSLSYTNPAVAATSANL 150
>gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens]
Length = 159
Score = 299 bits (765), Expect = 7e-82
Identities = 150/159 (94%), Positives = 150/159 (94%), Gaps = 9/159 (5%)
Query: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 52 NAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHG 111
NAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHG
Sbjct: 61 NAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHG 120
Query: 112 RYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 150
RYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 121 RYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 159
>gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens]
Length = 203
Score = 215 bits (547), Expect = 1e-56
Identities = 120/203 (59%), Positives = 131/203 (64%), Gaps = 53/203 (26%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQ---------RSSVPSSTEK 51
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQ ++++P+ T
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
Query: 52 NAFN----------------------SSLEDPSTDYYQELQRDIS--------------- 74
+ SS+ D + + +
Sbjct: 61 KSCRETFLKCFCRFINKGVFWASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVA 120
Query: 75 -------EMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKV 127
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKV
Sbjct: 121 LAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKV 180
Query: 128 SAGNGGSSLSYTNPAVAATSANL 150
SAGNGGSSLSYTNPAVAATSANL
Sbjct: 181 SAGNGGSSLSYTNPAVAATSANL 203
>gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens]
Length = 255
Score = 160 bits (406), Expect = 3e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 76 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 135
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 181 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 240
Query: 136 LSYTNPAVAATSANL 150
LSYTNPAVAATSANL
Sbjct: 241 LSYTNPAVAATSANL 255
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLED 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLED
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLED 60
Query: 61 PSTDYYQELQRDISEM 76
PSTDYYQELQRDISEM
Sbjct: 61 PSTDYYQELQRDISEM 76
>gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]
Length = 264
Score = 160 bits (406), Expect = 3e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 76 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 135
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 190 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 249
Query: 136 LSYTNPAVAATSANL 150
LSYTNPAVAATSANL
Sbjct: 250 LSYTNPAVAATSANL 264
Score = 143 bits (361), Expect = 5e-35
Identities = 76/85 (89%), Positives = 76/85 (89%), Gaps = 9/85 (10%)
Query: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 52 NAFNSSLEDPSTDYYQELQRDISEM 76
NAFNSSLEDPSTDYYQELQRDISEM
Sbjct: 61 NAFNSSLEDPSTDYYQELQRDISEM 85
>gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens]
Length = 273
Score = 160 bits (406), Expect = 3e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 76 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 135
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 199 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 258
Query: 136 LSYTNPAVAATSANL 150
LSYTNPAVAATSANL
Sbjct: 259 LSYTNPAVAATSANL 273
Score = 140 bits (352), Expect = 5e-34
Identities = 76/94 (80%), Positives = 76/94 (80%), Gaps = 18/94 (19%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA------- 53
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNALSTGVSF 60
Query: 54 -----------FNSSLEDPSTDYYQELQRDISEM 76
FNSSLEDPSTDYYQELQRDISEM
Sbjct: 61 FFLSFHISNLQFNSSLEDPSTDYYQELQRDISEM 94
>gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens]
Length = 158
Score = 105 bits (262), Expect = 1e-23
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 53
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 53
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 35.0 bits (79), Expect = 0.024
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 31/153 (20%)
Query: 12 LLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQR 71
+L T TV TGS +TP +TS T S ++T A S+ ST +
Sbjct: 2107 VLTTTTTTVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGTTPIPP 2163
Query: 72 DISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHT----------HGRYVPPSS--T 119
++ A N T P S T HT HGR +PPSS T
Sbjct: 2164 VLTTTATTPAATSN-----------TVTPSSALGTTHTPPVPNTMATTHGRSLPPSSPHT 2212
Query: 120 DRSPYEKVSAGNGGSS-----LSYTNPAVAATS 147
R+ + ++G G++ + T+ +AAT+
Sbjct: 2213 VRTAWTSATSGILGTTHITEPSTVTSHTLAATT 2245
Score = 35.0 bits (79), Expect = 0.024
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 12 LLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQR 71
+L T TV TGS +TP +TS T S ++T A S+ ST +
Sbjct: 3364 VLTTTTTTVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGTTPIPP 3420
Query: 72 DISEMAVCQCRRKNYGQLDIFPAR---DTYHPMSEYPTYHTHGRYVPPSS--TDRSPYEK 126
++ A + + P+ T+ P T THGR +PPSS T R+ +
Sbjct: 3421 VLTTTATTPAATSS----TVTPSSALGTTHTPPVPNTTATTHGRSLPPSSPHTVRTAWTS 3476
Query: 127 VSAGNGGSS 135
++G G++
Sbjct: 3477 ATSGILGTT 3485
Score = 34.3 bits (77), Expect = 0.041
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 12 LLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQR 71
+L T TV TGS +TP +TS T S + ++T A S+ ST +
Sbjct: 3921 VLTTTTTTVATGS---MATPSSSTQTSGTPPSLITTATTITATGSTTNPSSTPGTTPIPP 3977
Query: 72 DISEMAVCQCRRKNYGQLDIFPAR---DTYHPMSEYPTYHTHGRYVPPSS--TDRSPYEK 126
++ A + + P+ T+ P T THGR + PSS T R+ +
Sbjct: 3978 VLTTTATTPAATSS----TVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTS 4033
Query: 127 VSAGNGGSS 135
++G G++
Sbjct: 4034 ATSGTLGTT 4042
Score = 33.1 bits (74), Expect = 0.090
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 12 LLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQR 71
+L T TV TGS +TP +TS T S ++T A S+ ST +
Sbjct: 2664 VLTTTTTTVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGTTPIPP 2720
Query: 72 DISEMAVCQCRRKNYGQLDIFPAR---DTYHPMSEYPTYHTHGRYVPPSS--TDRSPYEK 126
++ A + + P+ T+ P T THGR + PSS T R+ +
Sbjct: 2721 VLTTTATTPAATSS----TVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTS 2776
Query: 127 VSAGNGGSS 135
++G G++
Sbjct: 2777 ATSGTLGTT 2785
Score = 26.9 bits (58), Expect = 6.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 12 LLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPST 63
+L T TV TGS +TP +TS T S ++T A S+ ST
Sbjct: 4654 VLTTTTTTVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSST 4702
>gi|240255432 hypothetical protein LOC100130988 [Homo sapiens]
Length = 438
Score = 30.0 bits (66), Expect = 0.76
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 47 SSTEKNAFNSSLEDPSTDYYQELQRDISEMAVCQCR-RKNYGQLD--IFPARDTYHPM-- 101
S ++++ + ++E+ +Y +L R ++ V R NYG+ + PA +HP
Sbjct: 13 SISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKCNPAFLKFHPYPP 72
Query: 102 SEYPTYHTHGRYVPP 116
S P YH H Y PP
Sbjct: 73 SVLPDYHLHDPYPPP 87
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 29.3 bits (64), Expect = 1.3
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 2 TPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRS---------SVPSSTEKN 52
+PG S L L + T +G+ H++++PG T S S+PS E +
Sbjct: 8501 SPGATSEGTLTLDTSTTTFWSGT-HSTASPGFSHSEMTTLMSRTPGDVPWPSLPSVEEAS 8559
Query: 53 AFNSSLEDP---STDYYQELQRDIS 74
+ +SSL P ST ++ L IS
Sbjct: 8560 SVSSSLSSPAMTSTSFFSTLPESIS 8584
>gi|46359075 zinc finger protein 423 [Homo sapiens]
Length = 1284
Score = 29.3 bits (64), Expect = 1.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 21 VTGSGHASSTPGGEKETSAT--QRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMA 77
VT +G P +++TS R+SV S E+N + +ED S Q+D +A
Sbjct: 22 VTAAGGLEGEPECDQKTSRALEDRNSVTSQEERNEDDEDMEDESIYTCDHCQQDFESLA 80
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 29.3 bits (64), Expect = 1.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 17 VLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
V T V+ SSTPG + TSAT S++ SS +
Sbjct: 2228 VSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQ 2262
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 29.3 bits (64), Expect = 1.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 17 VLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
V T V+ SSTPG + TSAT S++ SS +
Sbjct: 2102 VSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQ 2136
>gi|71725360 zinc finger protein 609 [Homo sapiens]
Length = 1411
Score = 29.3 bits (64), Expect = 1.3
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 23 GSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMAVCQCR 82
G+ + SS G E + T+R P S E N E+ EL + +V Q R
Sbjct: 909 GALNPSSQAGVESQALKTKRDEEPESIEGKVKNDICEEKK----PELSSSSQQPSVIQQR 964
Query: 83 RKNYGQLDIFPARDTYHPMSEY--PTYHTHGRYVPPSSTDRSPYEK 126
Y Q ++ + Y P Y +YHTH + ++ R YE+
Sbjct: 965 PNMYMQ-SLYYNQYAYVPPYGYSDQSYHTH--LLSTNTAYRQQYEE 1007
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 28.9 bits (63), Expect = 1.7
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 22 TGSGH--ASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMAVC 79
+GS H ASS + + A Q S S T + +S +D ++ + E SE
Sbjct: 909 SGSRHHEASSHADISRHSQAGQGQSEGSRTSRRQGSSVSQDSDSEGHSE----DSERWSG 964
Query: 80 QCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 135
R + G + HP S + HG S +P+ + S+G +S
Sbjct: 965 SASRNHRGSAQEQSRHGSRHPRSHHEDRAGHGHSADSSRQSGTPHAETSSGGQAAS 1020
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLED 60
+TP T SP T ++ G+ S+TP S T S+ +S++ + SS E
Sbjct: 959 LTPNTTSPS------TSTSISAGTTSTSTTPASTTPASTTPASTSTASSQASQEGSSPEP 1012
Query: 61 PSTDYYQEL 69
P + L
Sbjct: 1013 PPESHSSSL 1021
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 28.9 bits (63), Expect = 1.7
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 29 STPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQ 88
STP T+++Q SS SS + S PST L + RRK+ G
Sbjct: 1127 STPDFPSGTNSSQSSSPSSSAPNSPAGSGHIRPST--LHGLAPKLGGQRYRSGRRKSAGN 1184
Query: 89 LDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPA 142
+ + P T P + P+S RSP + G S ++ P+
Sbjct: 1185 IPLSPLARTPSPTPQ------------PTSPQRSPSPLLGHSLGNSKIAQAFPS 1226
>gi|166295173 kin of IRRE like [Homo sapiens]
Length = 757
Score = 28.5 bits (62), Expect = 2.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 80 QCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYE 125
Q +NY + + P + + YPTY PPS +R+PYE
Sbjct: 681 QLSYENYEKFNSHP----FPGAAGYPTYRLGYPQAPPSGLERTPYE 722
>gi|145580634 V-set and transmembrane domain containing 1 precursor
[Homo sapiens]
Length = 236
Score = 28.5 bits (62), Expect = 2.2
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 11 LLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLE-------DPST 63
LLL L+V + S H+SS+ E+ T T S +P A S++E DP
Sbjct: 147 LLLFLSVFIIYRCSQHSSSS---EESTKRTSHSKLPEQEAAEADLSNMERVSLSTADPQG 203
Query: 64 DYYQELQRD-ISEMA 77
Y EL +SE A
Sbjct: 204 VTYAELSTSALSEAA 218
>gi|42734375 ankyrin repeat and sterile alpha motif domain
containing 3 [Homo sapiens]
Length = 656
Score = 28.5 bits (62), Expect = 2.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 77 AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRS 122
A + K YG + I DTY P Y + +Y SS+D S
Sbjct: 203 ATARMLAKQYGHMKIVALMDTYSPSLPKSLYRSPEKYEDLSSSDES 248
>gi|61675704 hypothetical protein LOC347487 [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 2.9
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 29 STPGGEKETSATQRSSVPSSTEKNAFNSSLEDPS 62
ST ++S+ +R+S SSTEK SSL+ PS
Sbjct: 114 STADKSSDSSSPERASAQSSTEKLIRPSSLQKPS 147
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 28.1 bits (61), Expect = 2.9
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMAV 78
T T A +T G+ T + + T A++ ++ T Y ++
Sbjct: 57 TTATYGQTAYATSYGQPPTVEGTSTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQA 116
Query: 79 CQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSP---YEKVSAGNGGSS 135
+ YG +PA P + PT G +S +S Y + S G G S+
Sbjct: 117 SYAAQSAYGTQPAYPAYG-QQPAATAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSN 175
Query: 136 LSY 138
SY
Sbjct: 176 YSY 178
>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
Length = 396
Score = 28.1 bits (61), Expect = 2.9
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 20 VVTGSGHASST-PGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMAV 78
VVTG AS+T PG T + S P+ST + PS+ + R ++E+
Sbjct: 304 VVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRKLAEVPP 363
Query: 79 C 79
C
Sbjct: 364 C 364
>gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
[Homo sapiens]
Length = 1168
Score = 28.1 bits (61), Expect = 2.9
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 18 LTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMA 77
++V S +S+ KE S ++ ++P S S ED S+D L + + ++
Sbjct: 526 ISVDLDSSLSSTLSNTSKEPSVCEKEALPISESSFKLLGSSEDLSSDSESHLPEEPAPLS 585
Query: 78 VCQCRRKNYGQLDIFP 93
Q R+ L FP
Sbjct: 586 PQQAFRRRANTLSHFP 601
>gi|115647981 glutamine and serine rich 1 [Homo sapiens]
Length = 1735
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 28 SSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRD 72
SS+P +K A Q SS SST +++ P Y E + D
Sbjct: 507 SSSPQSQKFLPAVQSSSFASSTHCQTLQNNITSPDPKSYAERKLD 551
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 27.3 bits (59), Expect = 5.0
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 24 SGHASSTPGG--EKETSATQRSSVPSSTEKNAFNSSLEDPST 63
S ASST G + + + VP S E+ AF S LE P T
Sbjct: 398 SSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQLETPET 439
>gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens]
Length = 859
Score = 27.3 bits (59), Expect = 5.0
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 34 EKETSA--TQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMAVC 79
EKETS+ Q S + +E + S ED S +EL++ S +++C
Sbjct: 596 EKETSSGEDQESEPKTESENQKESLSSEDNSQSVQEELKKKFSAVSLC 643
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 115 PPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSAN 149
PPSS +SP +S+G+GGS +S T+ + S++
Sbjct: 1216 PPSSKAKSP---ISSGSGGSHMSGTSSSSGMKSSS 1247
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 26.9 bits (58), Expect = 6.5
Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 17 VLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEM 76
V + + S + ST + + + SS S E + +P + Q D
Sbjct: 461 VASAHSSSAESESTSDSDSSSDSESESSSSDSEENEPLETPAPEPEPPTTNKWQLDNWLT 520
Query: 77 AVCQCRRKNYGQLDIFPARDTYHPMSEYPT------YHTHGRYVPPSSTDRSPYEKVSAG 130
V Q G P R HP S+ + H+ + PP S+ ++P A
Sbjct: 521 KVSQPAAPPEGPRSTEPPRR--HPESKGSSDSATSQEHSESKDPPPKSSSKAPRAPPEAP 578
Query: 131 NGGSSLSYTNPA 142
+ G +PA
Sbjct: 579 HPGKRSCQKSPA 590
>gi|23308699 transcription factor MAFB [Homo sapiens]
Length = 323
Score = 26.6 bits (57), Expect = 8.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 104 YPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAA 145
+P +H H + PP S+ SP +++ + G T A AA
Sbjct: 160 HPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHATASATAA 201
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.125 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,378,474
Number of Sequences: 37866
Number of extensions: 273989
Number of successful extensions: 976
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 66
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.