Guide to the Human Genome
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Name: ZNF609 Sequence: fasta or formatted (1411aa) NCBI GI: 71725360
Description:

zinc finger protein 609

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         98           2
 C cysteine            1.6         22           1
 D aspartate           5.4         76           3
 E glutamate           7.3        103           2
 F phenylalanine       0.9         13           1
 G glycine             8.2        116           4
 H histidine           1.9         27           6
 I isoleucine          2.6         36           2
 K lysine              9.1        128           4
 L leucine             6.2         87           2
 M methionine          1.8         25           2
 N asparagine          3.3         47           2
 P proline             8.9        126           3
 Q glutamine           4.0         57           3
 R arginine            4.1         58           2
 S serine             13.9        196           4
 T threonine           5.2         73           2
 V valine              5.1         72           2
 W tryptophan          0.6          8           1
 Y tyrosine            3.0         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 609 
ZNF608                0.347   zinc finger protein 608 
NEFH                  0.014   neurofilament, heavy polypeptide 200kDa 
SRRM2                 0.013   splicing coactivator subunit SRm300 
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform f...
AFF1                  0.012   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
DSPP                  0.011   dentin sialophosphoprotein preproprotein 
TCOF1                 0.011   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.011   Treacher Collins-Franceschetti syndrome 1 isoform e...
ATRX                  0.011   transcriptional regulator ATRX isoform 2 
ATRX                  0.011   transcriptional regulator ATRX isoform 1 
TNRC18                0.011   trinucleotide repeat containing 18 
AFF4                  0.010   ALL1 fused gene from 5q31 
TCOF1                 0.010   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TRDN                  0.010   triadin 
ANKRD11               0.009   ankyrin repeat domain 11 
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform d...
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform c ...
PCLO                  0.008   piccolo isoform 2 
PCLO                  0.008   piccolo isoform 1 
MUC17                 0.008   mucin 17 
ATN1                  0.007   atrophin-1 
ATN1                  0.007   atrophin-1 
GATA6                 0.007   GATA binding protein 6 
FLJ22184              0.007   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
NOLC1                 0.007   nucleolar and coiled-body phosphoprotein 1 
LOC643446             0.006   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.006   PREDICTED: similar to ribonucleic acid binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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