Guide to the Human Genome
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Name: TBC1D1 Sequence: fasta or formatted (1168aa) NCBI GI: 50658061
Description:

TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         57           2
 C cysteine            2.0         23           1
 D aspartate           3.8         44           2
 E glutamate           9.4        110           3
 F phenylalanine       4.5         52           2
 G glycine             4.6         54           4
 H histidine           3.5         41           2
 I isoleucine          5.0         58           2
 K lysine              6.4         75           2
 L leucine            11.4        133           3
 M methionine          2.4         28           2
 N asparagine          2.7         31           1
 P proline             6.1         71           3
 Q glutamine           6.5         76           2
 R arginine            5.9         69           3
 S serine              9.5        111           3
 T threonine           4.5         53           2
 V valine              4.5         53           2
 W tryptophan          0.6          7           1
 Y tyrosine            1.9         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member... 
TBC1D4                0.446   TBC1 domain family, member 4 
RABGAP1               0.083   RAB GTPase activating protein 1 
RABGAP1L              0.068   RAB GTPase activating protein 1-like isoform A [Homo...
EVI5                  0.068   ecotropic viral integration site 5 
EVI5L                 0.067   ecotropic viral integration site 5-like isoform 2 [H...
EVI5L                 0.066   ecotropic viral integration site 5-like isoform 1 [...
USP6NL                0.042   USP6 N-terminal like isoform 1 
USP6NL                0.042   USP6 N-terminal like isoform 2 
SGSM3                 0.041   small G protein signaling modulator 3 
TBC1D10B              0.041   TBC1 domain family, member 10B 
TBC1D10A              0.038   TBC1 domain family, member 10A 
TBC1D10C              0.038   TBC1 domain family, member 10C 
GRTP1                 0.036   growth hormone regulated TBC protein 1 
TBC1D2B               0.035   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.035   TBC1 domain family, member 2B isoform b 
TBC1D9                0.035   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D9B               0.031   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.031   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D12               0.031   TBC1 domain family, member 12 
TBC1D2                0.029   TBC1 domain family, member 2 
TBC1D8                0.029   TBC1 domain family, member 8 
TBC1D8B               0.029   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D14               0.028   TBC1 domain family, member 14 isoform b 
TBC1D14               0.028   TBC1 domain family, member 14 isoform a 
TBC1D14               0.028   TBC1 domain family, member 14 isoform a 
USP6                  0.022   ubiquitin specific protease 6 
TBC1D30               0.022   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.022   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.022   PREDICTED: TBC1 domain family, member 30 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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