Guide to the Human Genome
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Name: CXorf66 Sequence: fasta or formatted (361aa) NCBI GI: 61675704
Description:

hypothetical protein LOC347487

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         20           2
 C cysteine            3.0         11           1
 D aspartate           4.4         16           2
 E glutamate           4.2         15           1
 F phenylalanine       2.2          8           1
 G glycine             3.0         11           1
 H histidine           2.2          8           1
 I isoleucine          4.2         15           3
 K lysine             11.6         42           3
 L leucine             9.1         33           3
 M methionine          1.9          7           1
 N asparagine          5.5         20           2
 P proline             6.1         22           2
 Q glutamine           3.3         12           1
 R arginine            3.9         14           2
 S serine             15.8         57           3
 T threonine           5.3         19           2
 V valine              5.0         18           1
 W tryptophan          0.3          1           1
 Y tyrosine            3.3         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC347487 
AFF1                  0.026   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
MLLT3                 0.024   myeloid/lymphoid or mixed-lineage leukemia (trithor...
TNRC18                0.022   trinucleotide repeat containing 18 
UBN2                  0.020   ubinuclein 2 
ZC3H11A               0.020   zinc finger CCCH-type containing 11A 
SRRM2                 0.020   splicing coactivator subunit SRm300 
CDKN2AIP              0.019   CDKN2A interacting protein 
PNN                   0.019   pinin, desmosome associated protein 
KIAA1853              0.017   KIAA1853 protein 
SETD1A                0.017   SET domain containing 1A 
PPARGC1A              0.017   peroxisome proliferator-activated receptor gamma, coa...
TTC28                 0.016   tetratricopeptide repeat domain 28 
ADAM29                0.016   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.016   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.016   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.016   ADAM metallopeptidase domain 29 preproprotein 
TJP1                  0.014   tight junction protein 1 isoform b 
TJP1                  0.014   tight junction protein 1 isoform a 
BEST1                 0.014   bestrophin 1 isoform 1 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
TXNDC2                0.014   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.014   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.014   thioredoxin domain-containing 2 isoform 1 
C6orf132              0.014   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.014   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.014   PREDICTED: hypothetical protein LOC647024 
NCOR2                 0.014   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.014   nuclear receptor co-repressor 2 isoform 1 
PCLO                  0.014   piccolo isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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