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Search of human proteins with 11277470
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11277470 CD27-binding (Siva) protein isoform 2 [Homo
sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11277470 CD27-binding (Siva) protein isoform 2 [Homo sapiens] 236 3e-63
gi|11277468 CD27-binding (Siva) protein isoform 1 [Homo sapiens] 169 3e-43
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 39 7e-04
gi|60099478 keratin associated protein 5-6 [Homo sapiens] 39 9e-04
gi|60593036 keratin associated protein 5-3 [Homo sapiens] 37 0.003
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 37 0.004
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 36 0.008
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 35 0.010
gi|30520320 ring finger protein 166 [Homo sapiens] 35 0.013
gi|123173777 keratin associated protein 5-8 [Homo sapiens] 35 0.017
gi|123702038 keratin associated protein 5-9 [Homo sapiens] 34 0.022
gi|83367075 metallothionein 1E [Homo sapiens] 33 0.038
gi|157266328 BRCA1 associated RING domain 1 [Homo sapiens] 33 0.038
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 33 0.049
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 33 0.064
gi|71274113 metallothionein 1A [Homo sapiens] 32 0.14
gi|10835230 metallothionein 1G [Homo sapiens] 32 0.14
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 32 0.14
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 32 0.14
gi|10835085 metallothionein 1H [Homo sapiens] 31 0.24
gi|23957690 component of oligomeric golgi complex 7 [Homo sapiens] 30 0.32
gi|10835232 metallothionein 1X [Homo sapiens] 30 0.32
gi|27414495 metallothionein 1B [Homo sapiens] 30 0.32
gi|28866947 metallothionein 1F [Homo sapiens] 30 0.42
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 30 0.42
gi|38093643 SET and MYND domain containing 1 [Homo sapiens] 30 0.54
gi|7657196 zinc finger protein 330 [Homo sapiens] 30 0.54
gi|94421471 ring finger protein 17 [Homo sapiens] 30 0.54
gi|153792259 zinc finger protein 778 [Homo sapiens] 30 0.54
gi|5174764 metallothionein 2A [Homo sapiens] 29 0.71
>gi|11277470 CD27-binding (Siva) protein isoform 2 [Homo sapiens]
Length = 110
Score = 236 bits (602), Expect = 3e-63
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFDPSGVASIACSSCVRAVDGKA 60
MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFDPSGVASIACSSCVRAVDGKA
Sbjct: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFDPSGVASIACSSCVRAVDGKA 60
Query: 61 VCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET 110
VCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET
Sbjct: 61 VCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET 110
>gi|11277468 CD27-binding (Siva) protein isoform 1 [Homo sapiens]
Length = 175
Score = 169 bits (429), Expect = 3e-43
Identities = 93/175 (53%), Positives = 98/175 (56%), Gaps = 65/175 (37%)
Query: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFD-------------------- 40
MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVF+
Sbjct: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFEKTKRLLFLGAQAYLDHVWDE 60
Query: 41 --------------PSGVASIACSSCVRAVDGKAV------------------------- 61
P+G A + DG+ +
Sbjct: 61 GCAVVHLPESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVRA 120
Query: 62 ------CGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET 110
CGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET
Sbjct: 121 VDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET 175
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 44 VASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVL 101
V + +CSSC K CG C + CG C + GCGS C+ C Y+
Sbjct: 49 VPACSCSSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQC------SCYKPCC 102
Query: 102 CTS 104
C+S
Sbjct: 103 CSS 105
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 62 CGQCERALCGQCVRTCWGCGSVACT-LCGLVDCSDMYEKVLCTSC 105
CG C CG C C GCGS C +C C+SC
Sbjct: 14 CGGCGSG-CGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSC 57
>gi|60099478 keratin associated protein 5-6 [Homo sapiens]
Length = 129
Score = 38.9 bits (89), Expect = 9e-04
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 44 VASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVL 101
V + +C+SC K CG C + CG C + GCGS C+ C C Y
Sbjct: 42 VPACSCTSCGSCGGSKGCCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSC--CKPCYCSSG 99
Query: 102 CTS 104
C S
Sbjct: 100 CGS 102
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 70 CGQCVRTCWGCGSVACT-LCGLVDCSDMYEKVLCTSC 105
CG C C GCGS C +C CTSC
Sbjct: 14 CGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCTSC 50
>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
Length = 238
Score = 37.4 bits (85), Expect = 0.003
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 44 VASIACSSCVRAVDGKAVCGQCE--RALCGQCVRTCWGCGSVAC 85
V + +CSSC K VCG C + CG C + GCGS C
Sbjct: 49 VPACSCSSCGSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCC 92
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 47 IACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACT-LCGLVDCSDMYEKVLCTSC 105
+ CS C CG C + CG C GCGS C +C C+SC
Sbjct: 1 MGCSGCSGGCGSS--CGGCGSS-CGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSC 57
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 36.6 bits (83), Expect = 0.004
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 43 GVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLC 102
G + AC SC + G CG C+ CG C + GCGS C CG S V C
Sbjct: 161 GCSKGACGSCGGSKGGCGSCGGCKGG-CGSCGGSKGGCGS-GCGGCG----SGCGVPVCC 214
Query: 103 TSCA 106
SC+
Sbjct: 215 CSCS 218
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 44 VASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSV-----ACTLCG 89
V + +CSSC GK CG C + CG C + GCGS C CG
Sbjct: 144 VPACSCSSC-----GKGGCGSCGCSKGACGSCGGSKGGCGSCGGCKGGCGSCG 191
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 44 VASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVL 101
V + +CSSC GK CG + CG C GCGS + G C K
Sbjct: 56 VPTCSCSSC-----GKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGG--SKGG 108
Query: 102 CTSC 105
C SC
Sbjct: 109 CGSC 112
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 43 GVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVA--CTLCGLVDCSDMYEKV 100
G C C C C CG C + GCGS C+ C CS
Sbjct: 195 GGCGSGCGGCGSGCGVPVCCCSCSS--CGSCAGSKGGCGSSCSQCSCCKPCCCSSGCGSS 252
Query: 101 LCTS 104
C S
Sbjct: 253 CCQS 256
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 26 SRGVCAERYSQEVFDPSGVASIACSSCVRAVDGKAVC--------GQCERALCGQCVRTC 77
S+G C + SG S CV K +C C + CG C
Sbjct: 105 SKGGCGSCGGSKGGCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSC---- 160
Query: 78 WGCGSVACTLCG 89
GC AC CG
Sbjct: 161 -GCSKGACGSCG 171
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 22/72 (30%)
Query: 42 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVAC--------TLCGLVDC 93
SG +C C CG C CG C C G GS C C + C
Sbjct: 7 SGGCGSSCGGCGSG------CGGCGSG-CGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTC 59
Query: 94 SDMYEKVLCTSC 105
S C+SC
Sbjct: 60 S-------CSSC 64
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 42 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVL 101
SG S CV K VC + C C + GCGS + G C K
Sbjct: 33 SGCGGSGSSCCVPVCCCKPVCCRVPTCSCSSCGK--GGCGSSGGSKGGCGSCGGC--KGG 88
Query: 102 CTSC 105
C SC
Sbjct: 89 CGSC 92
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 35.8 bits (81), Expect = 0.008
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 42 SGVASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACT 86
S V + +C+SC K CG C + CG C + GCGS C+
Sbjct: 68 SWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCS 114
Score = 28.9 bits (63), Expect = 0.93
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 50 SSCVRAVDGKAVCGQCERALCGQCVRTCWGCGS-VACTLCGLVDCSDMYEKVLCTSC 105
S C G+ CG CG C +C GCGS +C CTSC
Sbjct: 26 SGCGGCGSGRGGCGSG----CGGCSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTSC 78
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 47 IACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGS 82
+ C C R CG C + CG C C GCGS
Sbjct: 1 MGCCGCSRGCGSG--CGGCGSS-CGGCGSGCGGCGS 33
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 62 CGQCERAL---CGQCVRTCWGCGSVACTLCG 89
C C R CG C +C GCGS C CG
Sbjct: 3 CCGCSRGCGSGCGGCGSSCGGCGS-GCGGCG 32
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 49 CSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVAC 85
C SC + G CG + + C C + GCGS C
Sbjct: 98 CGSCGGSKGGCGSCGCSQSSCCKPCCCSS-GCGSSCC 133
Score = 26.2 bits (56), Expect = 6.0
Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 43 GVASIACSSC-----VRAVDGKAVCG---QCERALCGQCVRTCWGCGSVACTLCGLVDCS 94
G S +C C V K VC C CG C + GCGS + G C
Sbjct: 43 GGCSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCG 102
Query: 95 DMYEKVLCTSC 105
K C SC
Sbjct: 103 G--SKGGCGSC 111
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 44 VASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVL 101
V + +CSSC K CG C + CG C + GCGS + G C K
Sbjct: 56 VPACSCSSCGSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGG--SKGG 113
Query: 102 CTSC 105
C SC
Sbjct: 114 CGSC 117
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 49 CSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSC 105
C SC + G CG C + CG C + GCGS C+ C C C SC
Sbjct: 104 CGSCGGSKGG---CGSCGGSKGGCGSCGGSKGGCGSCGCSQCNC--CKPCCCSSGCGSC 157
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 42 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACT-LCGLVDCSDMYEKV 100
SG C C CG C CG C GCGS C +C
Sbjct: 7 SGGCGSGCGGCGSG------CGGCGSG-CGGYGSGCGGCGSSCCVPVCCCKPVCCCVPAC 59
Query: 101 LCTSC 105
C+SC
Sbjct: 60 SCSSC 64
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 35.0 bits (79), Expect = 0.013
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 45 ASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGL 90
A C C+ G C CG+C++ C S C LC L
Sbjct: 29 AQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRL 74
>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
Length = 187
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 48 ACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTS 104
+C SC + G+ CG + CG C + GCGS C+ C Y+ C+S
Sbjct: 49 SCGSCGGSKGGRGSCGG-SKGDCGSCGGSKGGCGSCGCSQC------SCYKPCCCSS 98
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 70 CGQCVRTCWGCGSVACT-LCGLVDCSDMYEKVLCTSC 105
CG C C GCGS C +C C+SC
Sbjct: 14 CGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSC 50
>gi|123702038 keratin associated protein 5-9 [Homo sapiens]
Length = 169
Score = 34.3 bits (77), Expect = 0.022
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 41 PSGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLC 88
PS A + C V C C + CG C + GCGS C+ C
Sbjct: 33 PSCCAPVYCCKPVCCCVPACSCSSCGKRGCGSCGGSKGGCGSCGCSQC 80
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 44 VASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCS 94
V + +CSSC GK CG C + G C CG C+ C CS
Sbjct: 49 VPACSCSSC-----GKRGCGSCGGSKGG-----CGSCGCSQCSCCKPCCCS 89
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 62 CGQCERALCGQCVRTCWGCGSVACT---LCGLVDCSDMYEKVLCTSC 105
CG C+ + CG C C GCG C C V C C+SC
Sbjct: 14 CGGCDSS-CGSCGSGCRGCGPSCCAPVYCCKPVCC--CVPACSCSSC 57
>gi|83367075 metallothionein 1E [Homo sapiens]
Length = 61
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 51 SCVRAVDGKAVCG---QCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEKVLCTSC 105
+C A G C +C+ C C ++C C V C C G V C EK C+ C
Sbjct: 4 NCSCATGGSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCV-CKGASEK--CSCC 60
Query: 106 A 106
A
Sbjct: 61 A 61
>gi|157266328 BRCA1 associated RING domain 1 [Homo sapiens]
Length = 777
Score = 33.5 bits (75), Expect = 0.038
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 47 IACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVAC 85
+ CS C + G CE C CV C G G C
Sbjct: 48 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC 86
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 33.1 bits (74), Expect = 0.049
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 43 GVASIACSSCVRAVDG-------KAVCGQC--ERALCGQCVRTCWGCGSVACT 86
GV+ AC SC + G K CG C + CG C + GCGS C+
Sbjct: 103 GVSKGACGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSYGCS 155
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 19/74 (25%)
Query: 44 VASIACSSCVRAVDGKAVCGQC------------ERALCGQCVRTCWGCGSVACTLCGLV 91
V + +CSSC GK CG C + CG C + GCGS + G
Sbjct: 76 VPACSCSSC-----GKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGCGSCGGSKGGCG 130
Query: 92 DCSDMYEKVLCTSC 105
C K C SC
Sbjct: 131 SCGG--SKGGCGSC 142
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 49 CSSCVRAVDG-KAVCGQCERAL--CGQCVRTCWGCGSVACTLCGLVDC 93
C C G + CG C CG C C GCG C V C
Sbjct: 21 CGGCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGSGCCVPVCC 68
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 18/79 (22%)
Query: 43 GVASIACSSCVRAVDGKAVCGQCERALCGQ---------CVR--TCWGCGSVACTLC--- 88
G C C G A CG C C CV +C CG C C
Sbjct: 36 GGCGSGCGGCGGCGSGCAGCGGCGSGCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGGS 95
Query: 89 --GLVDCSDMYEKVLCTSC 105
G V C K C SC
Sbjct: 96 KRGCVSCG--VSKGACGSC 112
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 52 CVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSC 105
CV K CG C + CG C + GCGS + G V C K C SC
Sbjct: 91 CVSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCVSCGG--SKGGCGSC 144
Score = 32.3 bits (72), Expect = 0.084
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 42 SGVASIACSSCVRAVDG-KAVCGQCERALCGQCVRTCWGCGSVACT-LCGLVDCSDMYEK 99
SG C C G + CG C CG C C GCGS C +C
Sbjct: 7 SGGCGSGCGGCGSGCGGCGSGCGGCGSG-CGGCGSGCGGCGSSCCVPICCCKPVCCCVPA 65
Query: 100 VLCTSC 105
C+SC
Sbjct: 66 CSCSSC 71
Score = 32.3 bits (72), Expect = 0.084
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 49 CSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLC 88
C SC + G CG C + CG C + GCGS C+ C
Sbjct: 161 CGSCGGSKGG---CGSCGGSKGGCGSCGGSKGGCGSCGCSQC 199
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 43 GVASIACS--SCVRAVDGKAVCGQ--CERALCGQCVRTCWGCGSVAC--TLCGLVDCSDM 96
G S CS SC + + CG C+ + C C + GCGS C + C C
Sbjct: 190 GCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSS-GCGSSCCQSSCCKPYCCQSS 248
Query: 97 YEKVLCTS 104
K C+S
Sbjct: 249 CCKPCCSS 256
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 42 SGVASIACSSCVRAVDGKAVC---GQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYE 98
SG S CV K VC C + CG C + G GS + G V C
Sbjct: 40 SGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGG--S 97
Query: 99 KVLCTSC 105
K C SC
Sbjct: 98 KGGCGSC 104
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 49 CSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSC 105
C SC + G CG C + C C + GCGS + G V C K C SC
Sbjct: 111 CGSCGGSKGG---CGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGG--SKGGCGSC 164
>gi|71274113 metallothionein 1A [Homo sapiens]
Length = 61
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 51 SCVRAVDGKAVCG---QCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEKVLCTSC 105
+C A G C +C+ C C ++C C ++C C G + C EK C+ C
Sbjct: 4 NCSCATGGSCTCTGSCKCKECKCTSCKKSCCSCCPMSCAKCAQGCI-CKGASEK--CSCC 60
Query: 106 A 106
A
Sbjct: 61 A 61
>gi|10835230 metallothionein 1G [Homo sapiens]
Length = 61
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 42 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEK 99
+GV+ SSC +C+ C C ++C C V C C G + C EK
Sbjct: 9 AGVSCTCASSC-----------KCKECKCTSCKKSCCSCCPVGCAKCAQGCI-CKGASEK 56
Query: 100 VLCTSCA 106
C+ CA
Sbjct: 57 --CSCCA 61
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVF---DPSGVASIA-------CS 50
+P P + +P +V V + + CAER+ + F D + V S C+
Sbjct: 105 VPAPGSPVSGSSPFATQVGVIRCPVCSQECAERHIIDNFFVKDTTEVPSSTVEKSNQVCT 164
Query: 51 SCVRAVDGKAVCGQCERALCGQCVR 75
SC + C +C LC C+R
Sbjct: 165 SCEDNAEANGFCVECVEWLCKTCIR 189
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVF---DPSGVASIA-------CS 50
+P P + +P +V V + + CAER+ + F D + V S C+
Sbjct: 105 VPAPGSPVSGSSPFATQVGVIRCPVCSQECAERHIIDNFFVKDTTEVPSSTVEKSNQVCT 164
Query: 51 SCVRAVDGKAVCGQCERALCGQCVR 75
SC + C +C LC C+R
Sbjct: 165 SCEDNAEANGFCVECVEWLCKTCIR 189
>gi|10835085 metallothionein 1H [Homo sapiens]
Length = 61
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 51 SCVRAVDGKAVCG---QCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEKVLCTSC 105
+C G C +C++ C C ++C C + C C G + C EK C+ C
Sbjct: 4 NCSCEAGGSCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCI-CKGASEK--CSCC 60
Query: 106 A 106
A
Sbjct: 61 A 61
>gi|23957690 component of oligomeric golgi complex 7 [Homo sapiens]
Length = 770
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 8 FADVAPLQLKVRVSQRELSRGV---CAERYSQEVFDPSGVASIACSSCVRAVDGKAVCG 63
+ D+ L +++S L G C + S V G+AS A CVR +G CG
Sbjct: 362 YGDMEESNLLIQMSAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCVRFTNGLGTCG 420
>gi|10835232 metallothionein 1X [Homo sapiens]
Length = 61
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Query: 42 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEK 99
S V S AC+ G C +C+ C C ++C C V C C G + C +K
Sbjct: 8 SPVGSCACA-------GSCKCKECK---CTSCKKSCCSCCPVGCAKCAQGCI-CKGTSDK 56
Query: 100 VLCTSCA 106
C+ CA
Sbjct: 57 --CSCCA 61
>gi|27414495 metallothionein 1B [Homo sapiens]
Length = 61
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 51 SCVRAVDGKAVCG---QCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEKVLCTSC 105
+C G C +C+ C C + C C V C C G V C EK C C
Sbjct: 4 NCSCTTGGSCACAGSCKCKECKCTSCKKCCCSCCPVGCAKCAQGCV-CKGSSEK--CRCC 60
Query: 106 A 106
A
Sbjct: 61 A 61
>gi|28866947 metallothionein 1F [Homo sapiens]
Length = 61
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 42 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEK 99
S A ++C+ G C +C+ C C ++C C V C+ C G V C EK
Sbjct: 6 SCAAGVSCTCA-----GSCKCKECK---CTSCKKSCCSCCPVGCSKCAQGCV-CKGASEK 56
Query: 100 VLC 102
C
Sbjct: 57 CSC 59
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 42 SGVASIACSSCVRAVDGKAVC---GQCERALCGQCVRTCWGCGSVACTL--CGLVDCS 94
SG S CV K VC C + CG C + GCGS + CG CS
Sbjct: 26 SGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGCGSCGSSKGGCGSCGCS 83
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 49 CSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVAC-TLCGLVDC--SDMYEKVLCTSC 105
C SC + G CG + C C + GCGS C + C C S + C C
Sbjct: 67 CGSCGSSKGGCGSCGCSQSNCCKPCCSSS-GCGSFCCQSSCSKPCCCQSSCCQSSCCKPC 125
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 62 CGQCERALCGQCVRTCWGCGSVACT-LCGLVDCSDMYEKVLCTSC 105
CG C G C C GCGS C +C C+SC
Sbjct: 14 CGGCGSG-SGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSC 57
>gi|38093643 SET and MYND domain containing 1 [Homo sapiens]
Length = 490
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 29 VCAER-YSQEVFDPSGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTC 77
+ AER YS VFD + + C +C + + CGQC+ A C RTC
Sbjct: 33 IFAERAYSAVVFD--SLVNFVCHTCFKRQEKLHRCGQCKFA--HYCDRTC 78
>gi|7657196 zinc finger protein 330 [Homo sapiens]
Length = 320
Score = 29.6 bits (65), Expect = 0.54
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 21 SQRELSRGVCAERYSQEVFDPSGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGC 80
++RE + + A R + ++ AS+ C C R +A C C Q + C C
Sbjct: 14 NRREREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNSV---QKLPICAQC 70
Query: 81 GSVACTLCGLVDCSDMYEKVLCTSCAM 107
G C + DC + V T AM
Sbjct: 71 GKTKCMMKS-SDCVIKHAGVYSTGLAM 96
>gi|94421471 ring finger protein 17 [Homo sapiens]
Length = 1623
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 41 PSGVASIACSSCVRAVD---GKAVCGQCERALCGQCVRTCWGCGSVACTLC 88
P G A I C+ C R V G QC A C C+ C ++ C C
Sbjct: 24 PWGAAEIQCTRCGRRVSRSSGHHCELQCGHAFCELCLLMTEECTTIICPDC 74
>gi|153792259 zinc finger protein 778 [Homo sapiens]
Length = 729
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 42 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVD 92
+G+ CS C +A + + R G+ TC CG CT GL +
Sbjct: 388 TGIKPYTCSYCGKAFTVRCGLTRHVRTHTGEKPYTCKDCGKAFCTSSGLTE 438
>gi|5174764 metallothionein 2A [Homo sapiens]
Length = 61
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 51 SCVRAVDGKAVCG---QCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEKVLCTSC 105
+C A C +C+ C C ++C C V C C G + C +K C+ C
Sbjct: 4 NCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCI-CKGASDK--CSCC 60
Query: 106 A 106
A
Sbjct: 61 A 61
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.135 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,624,068
Number of Sequences: 37866
Number of extensions: 203563
Number of successful extensions: 1496
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 211
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.