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Search of human proteins with 10834978
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10834978 interleukin 8 precursor [Homo sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10834978 interleukin 8 precursor [Homo sapiens] 200 2e-52
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens] 72 7e-14
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens] 72 9e-14
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens] 69 6e-13
gi|4505981 pro-platelet basic protein precursor [Homo sapiens] 67 2e-12
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi... 66 7e-12
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota... 59 6e-10
gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4) ... 58 2e-09
gi|4505735 platelet factor 4 variant 1 [Homo sapiens] 55 9e-09
gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac... 55 1e-08
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens] 47 4e-06
gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Hom... 45 9e-06
gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Hom... 45 9e-06
gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 44 2e-05
gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 44 2e-05
gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 44 2e-05
gi|4506831 small inducible cytokine A18 precursor [Homo sapiens] 44 4e-05
gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens] 43 5e-05
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens] 43 5e-05
gi|4506843 chemokine (C-C motif) ligand 3 [Homo sapiens] 42 1e-04
gi|22538814 small inducible cytokine A5 precursor [Homo sapiens] 42 1e-04
gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Hom... 42 1e-04
gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Hom... 42 1e-04
gi|4885587 small inducible cytokine A13 precursor [Homo sapiens] 41 2e-04
gi|4506845 chemokine C-C motif ligand 4 isoform 1 precursor [Hom... 40 3e-04
gi|13435402 chemokine (C-C motif) ligand 7 precursor [Homo sapiens] 39 9e-04
gi|4506827 small inducible cytokine A11 precursor [Homo sapiens] 39 0.001
gi|4759076 chemokine (C-C motif) ligand 20 isoform 1 [Homo sapiens] 38 0.002
gi|4506841 small inducible cytokine A2 precursor [Homo sapiens] 37 0.003
gi|22538816 small inducible cytokine A8 precursor [Homo sapiens] 36 0.006
>gi|10834978 interleukin 8 precursor [Homo sapiens]
Length = 99
Score = 200 bits (509), Expect = 2e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH 60
MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
Sbjct: 1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH 60
Query: 61 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 99
CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
Sbjct: 61 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 99
>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
Length = 107
Score = 72.4 bits (176), Expect = 7e-14
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Query: 5 LAVALLAAFLISAAL-CEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCAN 63
L VALL L++A+ GA L A ELRCQC++T + H K I+ ++V GPHCA
Sbjct: 16 LRVALLLLLLVAASRRAAGAPL---ATELRCQCLQTL-QGIHLKNIQSVKVKSPGPHCAQ 71
Query: 64 TEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 99
TE+I L +G++ CL+P V++++EK LK +++
Sbjct: 72 TEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 107
>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
Length = 107
Score = 72.0 bits (175), Expect = 9e-14
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 5 LAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANT 64
L VALL L++A A A ELRCQC++T + HPK I+ + V GPHCA T
Sbjct: 16 LRVALLLLLLVAAG--RRAAGASVATELRCQCLQTL-QGIHPKNIQSVNVKSPGPHCAQT 72
Query: 65 EIIVKLSDGRELCLDPKENWVQRVVEKFL 93
E+I L +GR+ CL+P V++++EK L
Sbjct: 73 EVIATLKNGRKACLNPASPIVKKIIEKML 101
>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
Length = 107
Score = 69.3 bits (168), Expect = 6e-13
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 5 LAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANT 64
L VALL L++A+ A ELRCQC++T + H K I+ + V GPHCA T
Sbjct: 16 LRVALLLLLLVAAS--RRAAGASVVTELRCQCLQTL-QGIHLKNIQSVNVRSPGPHCAQT 72
Query: 65 EIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 99
E+I L +G++ CL+P VQ+++EK L + +
Sbjct: 73 EVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 107
>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
Length = 128
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 31 ELRCQCIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVE 90
ELRC CIKT S HPK I+ L VI G HC E+I L DGR++CLDP ++++V+
Sbjct: 60 ELRCMCIKTTSG-IHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQ 118
Query: 91 KFLKRAENS 99
K L E++
Sbjct: 119 KKLAGDESA 127
>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
sapiens]
Length = 114
Score = 65.9 bits (159), Expect = 7e-12
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 2 TSKLAVALLAAFLISAALCEGAVLPRSA--KELRCQCIKTYSKPFHPKFIKELRVIESGP 59
+S L L+ L++ + P +A +ELRC C++T ++ HPK I L+V GP
Sbjct: 15 SSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQT-TQGVHPKMISNLQVFAIGP 73
Query: 60 HCANTEIIVKLSDGRELCLDPKENWVQRVVEKFL 93
C+ E++ L +G+E+CLDP+ ++++V++K L
Sbjct: 74 QCSKVEVVASLKNGKEICLDPEAPFLKKVIQKIL 107
>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
Length = 114
Score = 59.3 bits (142), Expect = 6e-10
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 8 ALLAAFLI---SAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANT 64
ALLA L+ L + ELRC C++ + +PK I +L+V +GP C+
Sbjct: 20 ALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLR-VNPKTIGKLQVFPAGPQCSKV 78
Query: 65 EIIVKLSDGRELCLDPKENWVQRVVEKFL 93
E++ L +G+++CLDP+ ++++V++K L
Sbjct: 79 EVVASLKNGKQVCLDPEAPFLKKVIQKIL 107
>gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4)
[Homo sapiens]
Length = 101
Score = 57.8 bits (138), Expect = 2e-09
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 5 LAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANT 64
L + L+ AF + A +G +L+C C+KT S+ P+ I L VI++GPHC
Sbjct: 20 LLLPLVVAFASAEAEEDG--------DLQCLCVKTTSQ-VRPRHITSLEVIKAGPHCPTA 70
Query: 65 EIIVKLSDGRELCLDPKENWVQRVVEKFLK 94
++I L +GR++CLD + +++++K L+
Sbjct: 71 QLIATLKNGRKICLDLQAPLYKKIIKKLLE 100
>gi|4505735 platelet factor 4 variant 1 [Homo sapiens]
Length = 104
Score = 55.5 bits (132), Expect = 9e-09
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 10 LAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANTEIIVK 69
LA L+ + +L+C C+KT S+ P+ I L VI++GPHC ++I
Sbjct: 20 LALLLLPVVVAFARAEAEEDGDLQCLCVKTTSQ-VRPRHITSLEVIKAGPHCPTAQLIAT 78
Query: 70 LSDGRELCLDPKENWVQRVVEKFLK 94
L +GR++CLD + ++++++ L+
Sbjct: 79 LKNGRKICLDLQALLYKKIIKEHLE 103
>gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell
chemoattractant) [Homo sapiens]
Length = 109
Score = 55.1 bits (131), Expect = 1e-08
Identities = 28/95 (29%), Positives = 51/95 (53%)
Query: 5 LAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANT 64
++ +LL L+S+ VL LRC+C++ S +FI ++++ G C
Sbjct: 4 ISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPRK 63
Query: 65 EIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 99
EIIV + +C+DP+ W+QR++E KR+ ++
Sbjct: 64 EIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSST 98
>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
Length = 125
Score = 46.6 bits (109), Expect = 4e-06
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 33 RCQCIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKF 92
RC CI T H + +K+L+ P C EII L +G + CL+P V+ +++K+
Sbjct: 30 RCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKW 89
Query: 93 LKR 95
K+
Sbjct: 90 EKQ 92
>gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Homo
sapiens]
Length = 93
Score = 45.4 bits (106), Expect = 9e-06
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 4 KLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTY-SKPFHPKFIKELRVIESGPHCA 62
+++ A LA L + ALC + A + C +Y S+ FI + E+ C+
Sbjct: 2 QVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADY--FETSSQCS 59
Query: 63 NTEIIVKLSDGRELCLDPKENWVQRVV 89
+I GR++C DP E WVQ+ V
Sbjct: 60 KPSVIFLTKRGRQVCADPSEEWVQKYV 86
>gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Homo
sapiens]
Length = 93
Score = 45.4 bits (106), Expect = 9e-06
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 4 KLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTY-SKPFHPKFIKELRVIESGPHCA 62
+++ A LA L + ALC + A + C +Y S+ FI + E+ C+
Sbjct: 2 QVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADY--FETSSQCS 59
Query: 63 NTEIIVKLSDGRELCLDPKENWVQRVV 89
+I GR++C DP E WVQ+ V
Sbjct: 60 KPSVIFLTKRGRQVCADPSEEWVQKYV 86
>gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform beta [Homo sapiens]
Length = 93
Score = 44.3 bits (103), Expect = 2e-05
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH 60
M +K+ V L+ L+ ALC P S RC C + + +K L+++ + P+
Sbjct: 1 MNAKVVVVLV---LVLTALCLSDGKPVSLS-YRCPC-RFFESHVARANVKHLKILNT-PN 54
Query: 61 CANTEIIVKL-SDGRELCLDPKENWVQRVVEKFLKR 95
CA +I+ +L ++ R++C+DPK W+Q +EK L +
Sbjct: 55 CA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform gamma [Homo sapiens]
Length = 119
Score = 44.3 bits (103), Expect = 2e-05
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH 60
M +K+ V L+ L+ ALC P S RC C + + +K L+++ + P+
Sbjct: 1 MNAKVVVVLV---LVLTALCLSDGKPVSLS-YRCPC-RFFESHVARANVKHLKILNT-PN 54
Query: 61 CANTEIIVKL-SDGRELCLDPKENWVQRVVEKFLKR 95
CA +I+ +L ++ R++C+DPK W+Q +EK L +
Sbjct: 55 CA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform alpha [Homo sapiens]
Length = 89
Score = 44.3 bits (103), Expect = 2e-05
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH 60
M +K+ V L+ L+ ALC P S RC C + + +K L+++ + P+
Sbjct: 1 MNAKVVVVLV---LVLTALCLSDGKPVSLS-YRCPC-RFFESHVARANVKHLKILNT-PN 54
Query: 61 CANTEIIVKL-SDGRELCLDPKENWVQRVVEKFLKR 95
CA +I+ +L ++ R++C+DPK W+Q +EK L +
Sbjct: 55 CA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|4506831 small inducible cytokine A18 precursor [Homo sapiens]
Length = 89
Score = 43.5 bits (101), Expect = 4e-05
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 5 LAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANT 64
LA ALL + + ALC A + + KEL C ++ P KFI + E+ P C
Sbjct: 4 LAAALLV-LVCTMALCSCAQVGTN-KELCCLVYTSWQIP--QKFIVDYS--ETSPQCPKP 57
Query: 65 EIIVKLSDGRELCLDPKENWVQRVV 89
+I+ GR++C DP + WVQ+ +
Sbjct: 58 GVILLTKRGRQICADPNKKWVQKYI 82
>gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens]
Length = 126
Score = 43.1 bits (100), Expect = 5e-05
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 31 ELRCQCIKTYSKPFHPKFIKELRV-IESGPHCANTEIIVKLSDGRELCLDPKENWVQRVV 89
EL C C+K+ S I + + + SG C ++I L DGR++ LDP+ ++++V
Sbjct: 56 ELCCVCVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIV 115
Query: 90 EKFLK 94
+K L+
Sbjct: 116 QKMLE 120
>gi|149999382 small inducible cytokine B10 precursor [Homo
sapiens]
Length = 98
Score = 43.1 bits (100), Expect = 5e-05
Identities = 21/93 (22%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 3 SKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCA 62
++ A+ + ++ + +G L R+ +RC CI ++P +P+ +++L +I + C
Sbjct: 2 NQTAILICCLIFLTLSGIQGVPLSRT---VRCTCISISNQPVNPRSLEKLEIIPASQFCP 58
Query: 63 NTEIIVKL-SDGRELCLDPKENWVQRVVEKFLK 94
EII + G + CL+P+ ++ +++ K
Sbjct: 59 RVEIIATMKKKGEKRCLNPESKAIKNLLKAVSK 91
>gi|4506843 chemokine (C-C motif) ligand 3 [Homo sapiens]
Length = 92
Score = 41.6 bits (96), Expect = 1e-04
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 4 KLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCAN 63
+++ A LA L + ALC +A C S+ FI + E+ C+
Sbjct: 2 QVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADY--FETSSQCSK 59
Query: 64 TEIIVKLSDGRELCLDPKENWVQRVV 89
+I R++C DP E WVQ+ V
Sbjct: 60 PGVIFLTKRSRQVCADPSEEWVQKYV 85
>gi|22538814 small inducible cytokine A5 precursor [Homo sapiens]
Length = 91
Score = 41.6 bits (96), Expect = 1e-04
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 4 KLAVALLAAFLISAALCEGA-VLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCA 62
K++ A LA LI+ ALC A P S+ C C ++P IKE + C+
Sbjct: 2 KVSAAALAVILIATALCAPASASPYSSDTTPC-CFAYIARPLPRAHIKEY--FYTSGKCS 58
Query: 63 NTEIIVKLSDGRELCLDPKENWVQRVV 89
N ++ R++C +P++ WV+ +
Sbjct: 59 NPAVVFVTRKNRQVCANPEKKWVREYI 85
>gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Homo
sapiens]
Length = 92
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 4 KLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPK-FIKELRVIESGPHCA 62
KL V +L+ ++ AA C A+ + C +Y+ P+ F+ + E+ C+
Sbjct: 2 KLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDY--YETSSLCS 59
Query: 63 NTEIIVKLSDGRELCLDPKENWVQRVV 89
++ + G+++C DP E+WVQ V
Sbjct: 60 QPAVVFQTKRGKQVCADPSESWVQEYV 86
>gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Homo
sapiens]
Length = 92
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 4 KLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPK-FIKELRVIESGPHCA 62
KL V +L+ ++ AA C A+ + C +Y+ P+ F+ + E+ C+
Sbjct: 2 KLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDY--YETSSLCS 59
Query: 63 NTEIIVKLSDGRELCLDPKENWVQRVV 89
++ + G+++C DP E+WVQ V
Sbjct: 60 QPAVVFQTKRGKQVCADPSESWVQEYV 86
>gi|4885587 small inducible cytokine A13 precursor [Homo sapiens]
Length = 98
Score = 41.2 bits (95), Expect = 2e-04
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 4 KLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYS-KPFHPKFIKELRVIESGPHCA 62
K++ LL L++AA + A + C T+S K + +K + S C
Sbjct: 2 KVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTS--RCP 59
Query: 63 NTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRA 96
+I + G+E+C DPKE WVQ ++ ++A
Sbjct: 60 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKA 93
>gi|4506845 chemokine C-C motif ligand 4 isoform 1 precursor [Homo
sapiens]
Length = 92
Score = 40.4 bits (93), Expect = 3e-04
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 4 KLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPK-FIKELRVIESGPHCA 62
KL V +L+ ++ AA C A+ + C +Y+ P+ F+ + E+ C+
Sbjct: 2 KLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDY--YETSSLCS 59
Query: 63 NTEIIVKLSDGRELCLDPKENWVQRVV 89
++ + +++C DP E+WVQ V
Sbjct: 60 QPAVVFQTKRSKQVCADPSESWVQEYV 86
>gi|13435402 chemokine (C-C motif) ligand 7 precursor [Homo
sapiens]
Length = 99
Score = 38.9 bits (89), Expect = 9e-04
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 4 KLAVALLAAFLISAALC-EGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCA 62
K + ALL L +AA +G P C + +K + ++ R S HC
Sbjct: 2 KASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSS-HCP 60
Query: 63 NTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAE 97
+I K +E+C DP + WVQ ++ K+ +
Sbjct: 61 REAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQ 95
>gi|4506827 small inducible cytokine A11 precursor [Homo sapiens]
Length = 97
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 4 KLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCAN 63
K++ ALL LI+AA + ++ C C ++ + ++ R I SG C
Sbjct: 2 KVSAALLWLLLIAAAFSPQGLAGPASVPTTC-CFNLANRKIPLQRLESYRRITSGK-CPQ 59
Query: 64 TEIIVKLSDGRELCLDPKENWVQ 86
+I K +++C DPK+ WVQ
Sbjct: 60 KAVIFKTKLAKDICADPKKKWVQ 82
>gi|4759076 chemokine (C-C motif) ligand 20 isoform 1 [Homo
sapiens]
Length = 96
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 8 ALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANTEII 67
+LL A L+S L +A C C+ + HPKFI + C II
Sbjct: 6 SLLLAALMSVLLLHLCGESEAASNFDC-CLGYTDRILHPKFIVGFTRQLANEGCDINAII 64
Query: 68 VKLSDGRELCLDPKENWVQRVVEKFLKRAEN 98
+C +PK+ WV+ +V K+ +N
Sbjct: 65 FHTKKKLSVCANPKQTWVKYIVRLLSKKVKN 95
>gi|4506841 small inducible cytokine A2 precursor [Homo sapiens]
Length = 99
Score = 37.0 bits (84), Expect = 0.003
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 4 KLAVALLAAFLISAALC-EGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCA 62
K++ ALL LI+A +G P + C ++ + + R I S C
Sbjct: 2 KVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSK-CP 60
Query: 63 NTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAE 97
+I K +E+C DPK+ WVQ ++ K+ +
Sbjct: 61 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQ 95
>gi|22538816 small inducible cytokine A8 precursor [Homo sapiens]
Length = 99
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 4 KLAVALLAAFLISAALC-EGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCA 62
K++ ALL L++A +G P S C ++ + ++ I + C
Sbjct: 2 KVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRI-TNIQCP 60
Query: 63 NTEIIVKLSDGRELCLDPKENWVQ 86
+I K G+E+C DPKE WV+
Sbjct: 61 KEAVIFKTKRGKEVCADPKERWVR 84
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,617,710
Number of Sequences: 37866
Number of extensions: 132627
Number of successful extensions: 357
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 55
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.