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Search of human proteins with 171543879
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|171543879 CD99 antigen isoform b precursor [Homo sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|171543879 CD99 antigen isoform b precursor [Homo sapiens] 343 4e-95
gi|4505183 CD99 antigen isoform a precursor [Homo sapiens] 333 5e-92
gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens] 74 6e-14
gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo sapi... 71 4e-13
gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens] 71 4e-13
gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens] 54 8e-08
gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens] 48 4e-06
gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens] 48 5e-06
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 41 6e-04
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 40 7e-04
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 39 0.002
gi|41352705 kinesin family member 3C [Homo sapiens] 39 0.002
gi|51479192 ring finger protein 1 [Homo sapiens] 39 0.002
gi|4758896 peroxisomal biogenesis factor 14 [Homo sapiens] 39 0.003
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 39 0.003
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 39 0.003
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 39 0.003
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 38 0.004
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 38 0.004
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 38 0.004
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 38 0.005
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 38 0.005
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.008
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 37 0.008
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 37 0.011
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 37 0.011
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 37 0.011
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 37 0.011
gi|222831660 family with sequence similarity 171, member A2 [Hom... 36 0.014
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 36 0.014
>gi|171543879 CD99 antigen isoform b precursor [Homo sapiens]
Length = 169
Score = 343 bits (880), Expect = 4e-95
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPM 60
MARGAALALLLFGLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPM
Sbjct: 1 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPM 60
Query: 61 PNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVGAVVV 120
PNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVGAVVV
Sbjct: 61 PNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVGAVVV 120
Query: 121 AVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQRTLLEK 169
AVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQRTLLEK
Sbjct: 121 AVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQRTLLEK 169
>gi|4505183 CD99 antigen isoform a precursor [Homo sapiens]
Length = 185
Score = 333 bits (853), Expect = 5e-92
Identities = 169/185 (91%), Positives = 169/185 (91%), Gaps = 16/185 (8%)
Query: 1 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV 44
MARGAALALLLFGLLGVLVAAPDGGFDLSDALP GDDFDLGDAVV
Sbjct: 1 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV 60
Query: 45 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE 104
DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
Sbjct: 61 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE 120
Query: 105 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR 164
ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
Sbjct: 121 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR 180
Query: 165 TLLEK 169
TLLEK
Sbjct: 181 TLLEK 185
>gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens]
Length = 190
Score = 73.9 bits (180), Expect = 6e-14
Identities = 71/185 (38%), Positives = 90/185 (48%), Gaps = 35/185 (18%)
Query: 3 RGAALALLLFGLLGVLVAAPDGGFD---LSDALPG------DDFDLGDAVVD-GENDDPR 52
R A L L F L LV G FD L DA+ +DFDL DA+ D + DD R
Sbjct: 5 RSAFLVCLAFSL-ATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDLADALDDRNDRDDGR 63
Query: 53 PPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE---GKGGSDGG-GSHRKEGEEADA- 107
KP+ + G FSD DL D V GGE KG DG GS+ G A
Sbjct: 64 R----KPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAE 111
Query: 108 PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQG-EVDMESHRNANA----EPAV 162
PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +QG D N A EP V
Sbjct: 112 PGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQQGLNADYVKGENLEAVVCEEPQV 169
Query: 163 QRTLL 167
+ + L
Sbjct: 170 KYSTL 174
>gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo
sapiens]
Length = 262
Score = 71.2 bits (173), Expect = 4e-13
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 25/145 (17%)
Query: 34 GDDFDLGDAVVD-GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE---GK 89
G+DFDL DA+ D + DD R KP+ + G FSD DL D V GGE K
Sbjct: 116 GNDFDLADALDDRNDRDDGRR----KPI--------AGGGGFSDKDLEDIVGGGEYKPDK 163
Query: 90 GGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQG- 146
G DG GS+ G A PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +QG
Sbjct: 164 GKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQQGL 221
Query: 147 EVDMESHRNANA----EPAVQRTLL 167
D N A EP V+ + L
Sbjct: 222 NADYVKGENLEAVVCEEPQVKYSTL 246
>gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens]
Length = 213
Score = 71.2 bits (173), Expect = 4e-13
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 25/145 (17%)
Query: 34 GDDFDLGDAVVD-GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE---GK 89
G+DFDL DA+ D + DD R KP+ + G FSD DL D V GGE K
Sbjct: 67 GNDFDLADALDDRNDRDDGRR----KPI--------AGGGGFSDKDLEDIVGGGEYKPDK 114
Query: 90 GGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQG- 146
G DG GS+ G A PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +QG
Sbjct: 115 GKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQQGL 172
Query: 147 EVDMESHRNANA----EPAVQRTLL 167
D N A EP V+ + L
Sbjct: 173 NADYVKGENLEAVVCEEPQVKYSTL 197
>gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens]
Length = 180
Score = 53.5 bits (127), Expect = 8e-08
Identities = 46/150 (30%), Positives = 61/150 (40%), Gaps = 45/150 (30%)
Query: 36 DFDLGDAVVDGE-----NDD----------PRPPNP---------PKPMPNPNP-NHPSS 70
DFDL DA+ D E N D P+P NP PKP P P P N +S
Sbjct: 24 DFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNS 83
Query: 71 SGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEGEEADAP----------GV 110
G F+D D DG +GG G G S G S G + + +
Sbjct: 84 GGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEGNMVAKI 143
Query: 111 IPGIVGAVVVAVAGAISSFIAYQKKKLCFK 140
+ IV VVV + GA +S+ ++ CF+
Sbjct: 144 VSPIVSVVVVTLLGAAASYFKLNNRRNCFR 173
>gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens]
Length = 181
Score = 48.1 bits (113), Expect = 4e-06
Identities = 43/151 (28%), Positives = 57/151 (37%), Gaps = 46/151 (30%)
Query: 36 DFDLGDAVVDGE-----NDD----------PRPPNP-----------PKPMPNPNPNHPS 69
DFDL DA+ D E N D P+P NP P+P P P + S
Sbjct: 24 DFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNS 83
Query: 70 SSGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEG----------EEADAPG 109
F+D D DG +GG G G S G S G E
Sbjct: 84 GGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEGNMVAK 143
Query: 110 VIPGIVGAVVVAVAGAISSFIAYQKKKLCFK 140
++ IV VVV + GA +S+ ++ CF+
Sbjct: 144 IVSPIVSVVVVTLLGAAASYFKLNNRRNCFR 174
>gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens]
Length = 195
Score = 47.8 bits (112), Expect = 5e-06
Identities = 47/165 (28%), Positives = 60/165 (36%), Gaps = 60/165 (36%)
Query: 36 DFDLGDAVVDGE-----NDD----------PRPPNP---------PKPMPNPNP-NHPSS 70
DFDL DA+ D E N D P+P NP PKP P P P N +S
Sbjct: 24 DFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNS 83
Query: 71 SGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEG------------------ 102
G F+D D DG +GG G G S G S G
Sbjct: 84 GGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDH 143
Query: 103 -------EEADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFK 140
E ++ IV VVV + GA +S+ ++ CF+
Sbjct: 144 HSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFR 188
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 40.8 bits (94), Expect = 6e-04
Identities = 39/125 (31%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 5 AALALLLFGLLGVLVAAPDG---GFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPMP 61
A LLL LLG L+AA G PG G +DGE P P PP P
Sbjct: 6 ACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKG 65
Query: 62 NPN-PNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGV----IPGIVG 116
P P P +G DG++G +G G G R PG+ +PG G
Sbjct: 66 APGKPGKPGEAG-LPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPG 124
Query: 117 AVVVA 121
V+
Sbjct: 125 EAGVS 129
Score = 28.5 bits (62), Expect = 2.9
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 33 PGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGS 92
PG D G+ +G P P P PS D +GV G +G+ G
Sbjct: 261 PGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGE 320
Query: 93 DGGGSHRKEGEEADAPGVIPGIVG 116
G + GE+ P +PG+ G
Sbjct: 321 --AGRNGAPGEK--GPNGLPGLPG 340
Score = 28.5 bits (62), Expect = 2.9
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 29/100 (29%)
Query: 46 GENDDPRPPNPPKPMPNPNPNHP----------------SSSGSFSDADLA----DGVSG 85
G P PP PP + +P P + G D A DG G
Sbjct: 557 GPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEG 616
Query: 86 GEGKGGSDGGGSHRKEGEEADAPGV--------IPGIVGA 117
+G G G K+G++ APG +PG +GA
Sbjct: 617 DQGPQGPQGVPGTSKDGQDG-APGEPGPPGDPGLPGAIGA 655
Score = 27.7 bits (60), Expect = 4.9
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 51 PRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHR-------KEGE 103
P PP PP P +P ++ + G G G G G ++ K+GE
Sbjct: 150 PGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGE 209
Query: 104 EAD----APGVIPGIVG 116
+ D P +PG VG
Sbjct: 210 KGDPGPPGPAGLPGSVG 226
Score = 27.7 bits (60), Expect = 4.9
Identities = 26/94 (27%), Positives = 32/94 (34%), Gaps = 17/94 (18%)
Query: 40 GDAVVDGENDDPRPPNP-----------PKPMPN-PNPNHPSSSGSFSDADLADGVSGGE 87
G+ DGE DP PP P P+ + P P P G+ G
Sbjct: 202 GEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAP 261
Query: 88 GKGGSDG-GGSHRKEGEEAD----APGVIPGIVG 116
GK G G G G + D P PG+ G
Sbjct: 262 GKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAG 295
Score = 27.3 bits (59), Expect = 6.4
Identities = 28/94 (29%), Positives = 32/94 (34%), Gaps = 22/94 (23%)
Query: 23 DGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADG 82
D G SD LPGD +LG + + G + P PN S G
Sbjct: 440 DQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSG---------VQG 490
Query: 83 VSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVG 116
V G G G G PGV PGI G
Sbjct: 491 VPGPPGPLGLQG------------VPGV-PGITG 511
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 40.4 bits (93), Expect = 7e-04
Identities = 41/114 (35%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 6 ALALLLFGLLGVLVAAPDG--GFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNP 63
AL LLL GL L AA G G PG G +DG+ PP PP P P
Sbjct: 10 ALGLLLLGLC--LCAAQRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEP 67
Query: 64 -NPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVG 116
P P G+ ADG++G +G GS G + E PGV PG G
Sbjct: 68 GKPGAPGKPGTPG----ADGLTGPDGSPGSIGSKGQKGE------PGV-PGSRG 110
Score = 31.2 bits (69), Expect = 0.44
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 32 LPGDDFDLGDAVVDGENDDPRPPNPPKPMPN----------PNPNHPSSSGSFSDADLAD 81
LPG+ +G G P PP PP P PN P SG +
Sbjct: 128 LPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSG-YPGLPGMR 186
Query: 82 GVSGGEGKGGSDGGGSHRKEGEEAD 106
G G +G+ G G H+ GEE D
Sbjct: 187 GHKGAKGEIGEPGRQGHK--GEEGD 209
Score = 27.3 bits (59), Expect = 6.4
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 32 LPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGG 91
LPG D G VDG + P P P P P +G G+ G +G G
Sbjct: 287 LPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGP--PGDAG-LQGLPGVPGIPGAKGVAG 343
Query: 92 SDGG-GSHRKEGEEADA--PGV--IPGIVG 116
G G+ K G+ ++ PG PG VG
Sbjct: 344 EKGSTGAPGKPGQMGNSGKPGQQGPPGEVG 373
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 33 PGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHP-SSSGSFSDADL--------ADGV 83
PG D+G G+ P P P P+ +P P P GS D + +G
Sbjct: 569 PGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGP 628
Query: 84 SGGEGKGGSDGGGSHRKEGEEAD-APGVIPGIVGAV 118
G G+ G G G + G + P PG+ G+V
Sbjct: 629 MGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSV 664
Score = 27.3 bits (59), Expect = 6.4
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 30 DALPGDDFDLGDAVVDGE---NDDPRPPNPPKPMPNPNPNHP------------SSSGSF 74
+ LPG G + + E + P PP PP P + P P S+SGS
Sbjct: 884 EGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSS 943
Query: 75 SDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVG 116
S G G G G +G++ D PGV PG +G
Sbjct: 944 SFGLNLQGPPGPPGPQG--------PKGDKGD-PGV-PGALG 975
>gi|41352705 kinesin family member 3C [Homo sapiens]
Length = 793
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 84 SGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKL 137
SGG G GG GGG+ + +EA + +G V+ A+AG S+ I Y+ KL
Sbjct: 269 SGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKL 322
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 19 VAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDAD 78
V P G D + + G + + G+ DGE D + P P P P P G
Sbjct: 156 VRRPIPGSDQTTTMSGGEGEPGEGEGDGE--DVSSDSAPDSAPGPAPKRPRGGG------ 207
Query: 79 LADGVSGGEGKGGSDGGGSHRKEGEEADAPGVIPG 113
A G S G G GG+ G G + D G + G
Sbjct: 208 -AGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG 241
>gi|4758896 peroxisomal biogenesis factor 14 [Homo sapiens]
Length = 377
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 51 PRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGV 110
P+ P+ P+ +P+P+ P++ S +D++ E S G H EG +
Sbjct: 236 PKIPSWQIPVKSPSPSSPAAVNHHSSSDISP--VSNESTSSSPGKEGHSPEGSTVTYHLL 293
Query: 111 IPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR 164
P G VV V G + + +++K KE+ E E D SH + VQR
Sbjct: 294 GPQEEGEGVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQR 347
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 38.5 bits (88), Expect = 0.003
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 53 PPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEG-KGGSDGGGSHRKEGEEADAPGVI 111
PP P P P P P G +DA A G +GG G G ++ G E EE D
Sbjct: 1265 PPLTLTPFPGPGPRRPPWEG--ADAGAAGGEAGGAGAPGPAEEDGEDEDEDEEEDEEAAA 1322
Query: 112 PG 113
PG
Sbjct: 1323 PG 1324
Score = 28.1 bits (61), Expect = 3.8
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 46 GENDDPRPPNPPKPM-----PNPNPNHPSSSGSFSDADLADGVSGGEG----------KG 90
G P PP PP P P +P+ PS+ S + G G+ +G
Sbjct: 775 GRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEG 834
Query: 91 GSDGGGSHRKEG 102
GGG+ +EG
Sbjct: 835 AFPGGGAAEEEG 846
Score = 27.7 bits (60), Expect = 4.9
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 55 NPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGV 110
+P P P P P S+SGSF L+ G G G + G GE AP V
Sbjct: 615 SPLFPAPRPFPAQSSASGSFL---LSGWDPEGRGAGETLAGDPAEVLGERGTAPWV 667
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo
sapiens]
Length = 2603
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 52 RPPNPP--KPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEAD 106
+PP K N PSSS S SD+D + G GG G GG GG S EE D
Sbjct: 65 KPPQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGTSSNNSEEEED 121
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo
sapiens]
Length = 2352
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 52 RPPNPP--KPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEAD 106
+PP K N PSSS S SD+D + G GG G GG GG S EE D
Sbjct: 65 KPPQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGTSSNNSEEEED 121
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 46 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 105
GEN D P PP P P P P ADG G G GS GG + E EA
Sbjct: 1222 GENGDVGPMGPPGP---PGPRGPQGPNG------ADGPQGPPGSVGSVGGVGEKGEPGEA 1272
Query: 106 DAPGVIPGIVG 116
PG PG G
Sbjct: 1273 GNPGP-PGEAG 1282
Score = 33.5 bits (75), Expect = 0.089
Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 33 PGDDFDLGDAVVDGENDDPRPPNPPKPM----------PNPNPNHPSSSGSFSDADLADG 82
PGDD G+ G DP PP P P + +P P G +A G
Sbjct: 1311 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA----G 1366
Query: 83 VSGGEGKGGSDG-GGSHRKEGE-----EADAPGVIPGIVGAV 118
G GK G G G+ ++GE EA A G PG G V
Sbjct: 1367 PPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP-PGKTGPV 1407
Score = 33.1 bits (74), Expect = 0.12
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 34 GDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSD 93
G D GD DG+ P PP P P P + A+ G G +G+ G++
Sbjct: 1339 GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAE 1398
Query: 94 G-GGSHRKEGEEADA--PGV-----IPGIVG 116
G G G + A PG IPG VG
Sbjct: 1399 GPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1429
Score = 30.0 bits (66), Expect = 0.99
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 32 LPGDDFDLGDAVVDGENDDPR---PPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEG 88
LPG D G +G++ + PP P P+ P P AD G+ G +G
Sbjct: 737 LPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR------GVKGADGVRGLKGSKG 790
Query: 89 KGGSDG 94
+ G DG
Sbjct: 791 EKGEDG 796
Score = 29.3 bits (64), Expect = 1.7
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 11 LFGLLGVLVAAPDGGFDLSDALPGDDFDLG---DAVVDGENDDPRP---PNPPKPMPNPN 64
L G G A G D PG ++G + G+ +P P P P P+ P
Sbjct: 665 LLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 724
Query: 65 PNHPSSSGSFSDADLADGVSGGEGKGGSDG 94
P + ADG G GK G G
Sbjct: 725 EKGPQGKPGLAGLPGADGPPGHPGKEGQSG 754
Score = 28.5 bits (62), Expect = 2.9
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 13 GLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPP-NPPKPMPNPNPNHPSSS 71
GL+G++ + G LPG G A DG P P PP P P P P +
Sbjct: 1468 GLIGLIGPPGEQGEKGDRGLPGTQGSPG-AKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN 1526
Query: 72 GSFSDADLADGVSGGEGKGGSDG 94
+ G SG G GS G
Sbjct: 1527 KGSTGPAGQKGDSGLPGPPGSPG 1549
Score = 28.1 bits (61), Expect = 3.8
Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 17 VLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSD 76
+ + P G L+ PG G + GE+ DP P P P P
Sbjct: 537 IALRGPPGPMGLTGR-PGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG 595
Query: 77 ADLADGVSGGEGKGGSDG 94
AD G+ G G G G
Sbjct: 596 ADGGRGMPGEPGAKGDRG 613
Score = 28.1 bits (61), Expect = 3.8
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 46 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 105
GE P PP PP P ++G + A G G +G G DG R E
Sbjct: 994 GERGHPGPPGPP-----GEQGLPGAAGK----EGAKGDPGPQGISGKDGPAGLRGFPGER 1044
Query: 106 DAPGV--IPGIVG 116
PG PG+ G
Sbjct: 1045 GLPGAQGAPGLKG 1057
Score = 28.1 bits (61), Expect = 3.8
Identities = 29/93 (31%), Positives = 33/93 (35%), Gaps = 23/93 (24%)
Query: 33 PGDDFDLGDAVVDGENDDPRP---PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGK 89
PG GD DG +P P P P P P P +G DGV G +G+
Sbjct: 1305 PGAKGPPGD---DGPKGNPGPVGFPGDPGP-----PGEPGPAGQ-------DGVGGDKGE 1349
Query: 90 GGSDGGGSHRKEGEEADAPGV-----IPGIVGA 117
G G EA PG PG GA
Sbjct: 1350 DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1382
Score = 27.7 bits (60), Expect = 4.9
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 32 LPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGG 91
LPG G DG+ + P + N P A G++GG+G+ G
Sbjct: 1124 LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG 1183
Query: 92 SDG-GGSHRKEGEEA--DAPGVIPGIVG 116
G G ++G+E PG PG +G
Sbjct: 1184 PRGQQGMFGQKGDEGARGFPGP-PGPIG 1210
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 46 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 105
GEN D P PP P P P P ADG G G GS GG + E EA
Sbjct: 1171 GENGDVGPMGPPGP---PGPRGPQGPNG------ADGPQGPPGSVGSVGGVGEKGEPGEA 1221
Query: 106 DAPGVIPGIVG 116
PG PG G
Sbjct: 1222 GNPGP-PGEAG 1231
Score = 33.5 bits (75), Expect = 0.089
Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 33 PGDDFDLGDAVVDGENDDPRPPNPPKPM----------PNPNPNHPSSSGSFSDADLADG 82
PGDD G+ G DP PP P P + +P P G +A G
Sbjct: 1260 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA----G 1315
Query: 83 VSGGEGKGGSDG-GGSHRKEGE-----EADAPGVIPGIVGAV 118
G GK G G G+ ++GE EA A G PG G V
Sbjct: 1316 PPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP-PGKTGPV 1356
Score = 33.1 bits (74), Expect = 0.12
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 34 GDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSD 93
G D GD DG+ P PP P P P + A+ G G +G+ G++
Sbjct: 1288 GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAE 1347
Query: 94 G-GGSHRKEGEEADA--PGV-----IPGIVG 116
G G G + A PG IPG VG
Sbjct: 1348 GPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1378
Score = 30.0 bits (66), Expect = 0.99
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 32 LPGDDFDLGDAVVDGENDDPR---PPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEG 88
LPG D G +G++ + PP P P+ P P AD G+ G +G
Sbjct: 686 LPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR------GVKGADGVRGLKGSKG 739
Query: 89 KGGSDG 94
+ G DG
Sbjct: 740 EKGEDG 745
Score = 29.3 bits (64), Expect = 1.7
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 11 LFGLLGVLVAAPDGGFDLSDALPGDDFDLG---DAVVDGENDDPRP---PNPPKPMPNPN 64
L G G A G D PG ++G + G+ +P P P P P+ P
Sbjct: 614 LLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 673
Query: 65 PNHPSSSGSFSDADLADGVSGGEGKGGSDG 94
P + ADG G GK G G
Sbjct: 674 EKGPQGKPGLAGLPGADGPPGHPGKEGQSG 703
Score = 28.5 bits (62), Expect = 2.9
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 13 GLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPP-NPPKPMPNPNPNHPSSS 71
GL+G++ + G LPG G A DG P P PP P P P P +
Sbjct: 1417 GLIGLIGPPGEQGEKGDRGLPGTQGSPG-AKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN 1475
Query: 72 GSFSDADLADGVSGGEGKGGSDG 94
+ G SG G GS G
Sbjct: 1476 KGSTGPAGQKGDSGLPGPPGSPG 1498
Score = 28.1 bits (61), Expect = 3.8
Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 17 VLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSD 76
+ + P G L+ PG G + GE+ DP P P P P
Sbjct: 486 IALRGPPGPMGLTGR-PGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG 544
Query: 77 ADLADGVSGGEGKGGSDG 94
AD G+ G G G G
Sbjct: 545 ADGGRGMPGEPGAKGDRG 562
Score = 28.1 bits (61), Expect = 3.8
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 46 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 105
GE P PP PP P ++G + A G G +G G DG R E
Sbjct: 943 GERGHPGPPGPP-----GEQGLPGAAGK----EGAKGDPGPQGISGKDGPAGLRGFPGER 993
Query: 106 DAPGV--IPGIVG 116
PG PG+ G
Sbjct: 994 GLPGAQGAPGLKG 1006
Score = 28.1 bits (61), Expect = 3.8
Identities = 29/93 (31%), Positives = 33/93 (35%), Gaps = 23/93 (24%)
Query: 33 PGDDFDLGDAVVDGENDDPRP---PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGK 89
PG GD DG +P P P P P P P +G DGV G +G+
Sbjct: 1254 PGAKGPPGD---DGPKGNPGPVGFPGDPGP-----PGEPGPAGQ-------DGVGGDKGE 1298
Query: 90 GGSDGGGSHRKEGEEADAPGV-----IPGIVGA 117
G G EA PG PG GA
Sbjct: 1299 DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1331
Score = 27.7 bits (60), Expect = 4.9
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 32 LPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGG 91
LPG G DG+ + P + N P A G++GG+G+ G
Sbjct: 1073 LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG 1132
Query: 92 SDG-GGSHRKEGEEA--DAPGVIPGIVG 116
G G ++G+E PG PG +G
Sbjct: 1133 PRGQQGMFGQKGDEGARGFPGP-PGPIG 1159
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 46 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 105
GEN D P PP P P P P ADG G G GS GG + E EA
Sbjct: 1210 GENGDVGPMGPPGP---PGPRGPQGPNG------ADGPQGPPGSVGSVGGVGEKGEPGEA 1260
Query: 106 DAPGVIPGIVG 116
PG PG G
Sbjct: 1261 GNPGP-PGEAG 1270
Score = 33.5 bits (75), Expect = 0.089
Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 33 PGDDFDLGDAVVDGENDDPRPPNPPKPM----------PNPNPNHPSSSGSFSDADLADG 82
PGDD G+ G DP PP P P + +P P G +A G
Sbjct: 1299 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA----G 1354
Query: 83 VSGGEGKGGSDG-GGSHRKEGE-----EADAPGVIPGIVGAV 118
G GK G G G+ ++GE EA A G PG G V
Sbjct: 1355 PPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP-PGKTGPV 1395
Score = 33.1 bits (74), Expect = 0.12
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 34 GDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSD 93
G D GD DG+ P PP P P P + A+ G G +G+ G++
Sbjct: 1327 GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAE 1386
Query: 94 G-GGSHRKEGEEADA--PGV-----IPGIVG 116
G G G + A PG IPG VG
Sbjct: 1387 GPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1417
Score = 30.0 bits (66), Expect = 0.99
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 32 LPGDDFDLGDAVVDGENDDPR---PPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEG 88
LPG D G +G++ + PP P P+ P P AD G+ G +G
Sbjct: 725 LPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR------GVKGADGVRGLKGSKG 778
Query: 89 KGGSDG 94
+ G DG
Sbjct: 779 EKGEDG 784
Score = 29.3 bits (64), Expect = 1.7
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 11 LFGLLGVLVAAPDGGFDLSDALPGDDFDLG---DAVVDGENDDPRP---PNPPKPMPNPN 64
L G G A G D PG ++G + G+ +P P P P P+ P
Sbjct: 653 LLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 712
Query: 65 PNHPSSSGSFSDADLADGVSGGEGKGGSDG 94
P + ADG G GK G G
Sbjct: 713 EKGPQGKPGLAGLPGADGPPGHPGKEGQSG 742
Score = 28.5 bits (62), Expect = 2.9
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 13 GLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPP-NPPKPMPNPNPNHPSSS 71
GL+G++ + G LPG G A DG P P PP P P P P +
Sbjct: 1456 GLIGLIGPPGEQGEKGDRGLPGTQGSPG-AKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN 1514
Query: 72 GSFSDADLADGVSGGEGKGGSDG 94
+ G SG G GS G
Sbjct: 1515 KGSTGPAGQKGDSGLPGPPGSPG 1537
Score = 28.1 bits (61), Expect = 3.8
Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 17 VLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSD 76
+ + P G L+ PG G + GE+ DP P P P P
Sbjct: 525 IALRGPPGPMGLTGR-PGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG 583
Query: 77 ADLADGVSGGEGKGGSDG 94
AD G+ G G G G
Sbjct: 584 ADGGRGMPGEPGAKGDRG 601
Score = 28.1 bits (61), Expect = 3.8
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 46 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 105
GE P PP PP P ++G + A G G +G G DG R E
Sbjct: 982 GERGHPGPPGPP-----GEQGLPGAAGK----EGAKGDPGPQGISGKDGPAGLRGFPGER 1032
Query: 106 DAPGV--IPGIVG 116
PG PG+ G
Sbjct: 1033 GLPGAQGAPGLKG 1045
Score = 28.1 bits (61), Expect = 3.8
Identities = 29/93 (31%), Positives = 33/93 (35%), Gaps = 23/93 (24%)
Query: 33 PGDDFDLGDAVVDGENDDPRP---PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGK 89
PG GD DG +P P P P P P P +G DGV G +G+
Sbjct: 1293 PGAKGPPGD---DGPKGNPGPVGFPGDPGP-----PGEPGPAGQ-------DGVGGDKGE 1337
Query: 90 GGSDGGGSHRKEGEEADAPGV-----IPGIVGA 117
G G EA PG PG GA
Sbjct: 1338 DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1370
Score = 27.7 bits (60), Expect = 4.9
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 32 LPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGG 91
LPG G DG+ + P + N P A G++GG+G+ G
Sbjct: 1112 LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG 1171
Query: 92 SDG-GGSHRKEGEEA--DAPGVIPGIVG 116
G G ++G+E PG PG +G
Sbjct: 1172 PRGQQGMFGQKGDEGARGFPGP-PGPIG 1198
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 37.7 bits (86), Expect = 0.005
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 53 PPNPPKPMPNPNP-NHPSSSGSFSDADLADGVSGGEGKGGSDGG-GSHRKEGEEADAPGV 110
PP+PP+ +P P HP GS+S A + G +G G GG GS + A AP +
Sbjct: 276 PPHPPQALPCPPACRHPEKQGSYSPALPLQPLGGHKGTGYQAGGLGSPYLRQQAAQAPYI 335
Query: 111 IP 112
P
Sbjct: 336 PP 337
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 37.7 bits (86), Expect = 0.005
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 29 SDALPGDDFDLGDAV-VDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE 87
S ++ DD L + DGE D + P N P+H +S G+ + D + SG E
Sbjct: 376 SKSMLKDDLKLSSSEDSDGEQDCDKTMPRSTPGSNSEPSHHNSEGADNSRDDSSSHSGSE 435
Query: 88 GKGGSDGGGSHRKEGEEADAP 108
GSD EA+ P
Sbjct: 436 SSSGSDSESESSSSDSEANEP 456
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.0 bits (84), Expect = 0.008
Identities = 39/120 (32%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 13 GLLGVLVAAPDGGFDL---SDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPS 69
GL G+ A + G D SD LPG D G GEN P P P P P P+
Sbjct: 999 GLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPA 1058
Query: 70 -------SSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGV-----IPGIVGA 117
SG A A G +G G G G + E E A G+ PG GA
Sbjct: 1059 GKSGDRGESGPAGPAG-APGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGA 1117
Score = 33.9 bits (76), Expect = 0.068
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 54 PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDG-GGSHRKEGEE-ADAPGVI 111
P PP P +P + P + A + GVSG +G G G GS +G A P I
Sbjct: 890 PGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGI 949
Query: 112 PGIVGA 117
GI GA
Sbjct: 950 AGITGA 955
Score = 33.1 bits (74), Expect = 0.12
Identities = 29/89 (32%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 33 PGDDFDLGDAVVDGENDDPRPPNPPKPMPNPN-PNHPSSSGSFSDADLADGVSGGEGKGG 91
PG D G GE+ P PP P P P P G+ DG G G+ G
Sbjct: 545 PGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGN-------DGAPGKNGERG 597
Query: 92 SDGG----GSHRKEGEEADAPGVIPGIVG 116
GG G K GE P PG G
Sbjct: 598 GPGGPGPQGPPGKNGE--TGPQGPPGPTG 624
Score = 30.4 bits (67), Expect = 0.76
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 19/84 (22%)
Query: 33 PGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGS 92
PG LG A + G PP P P +P P GV G GK G+
Sbjct: 941 PGAPGPLGIAGITGARGLAGPPGMPGPRGSPGP---------------QGVKGESGKPGA 985
Query: 93 DGGGSHRKEGEEADAPGVIPGIVG 116
+G R P +PG+ G
Sbjct: 986 NGLSGER----GPPGPQGLPGLAG 1005
Score = 28.5 bits (62), Expect = 2.9
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 32 LPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGG 91
LPG G+ G + P PP PP P S G A G G G G
Sbjct: 313 LPGAAGARGNDGARGSDGQPGPPGPPG-----TAGFPGSPG-------AKGEVGPAGSPG 360
Query: 92 SDGGGSHRKE-GEE----ADAPGVIPGIVGA 117
S+G R E G + A P PGI G+
Sbjct: 361 SNGAPGQRGEPGPQGHAGAQGPPGPPGINGS 391
Score = 28.5 bits (62), Expect = 2.9
Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 33/116 (28%)
Query: 33 PGDDFDLGDAVVDGENDDP---------------RPPNPPKPMPNPN----------PNH 67
PG ++G A G N P PP PP +P P
Sbjct: 347 PGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGA 406
Query: 68 PSSSGSF-----SDADLADGVSGGEGKGGSDGG-GSHRKEGEEADAPGVIPGIVGA 117
P G+ + A+ A G+ GG G+ G +G G GE +A IPG+ GA
Sbjct: 407 PGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAG--IPGVPGA 460
Score = 28.1 bits (61), Expect = 3.8
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 29 SDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEG 88
+D PG + + G G P P P P P + G+ G G
Sbjct: 586 NDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPG 645
Query: 89 KGGSDGGGSHRKEGE-----EADAPGVIPG 113
GG G + K GE +A APG PG
Sbjct: 646 TGGPP--GENGKPGEPGPKGDAGAPGA-PG 672
Score = 28.1 bits (61), Expect = 3.8
Identities = 39/148 (26%), Positives = 53/148 (35%), Gaps = 31/148 (20%)
Query: 34 GDDFDLGDAVVDGENDDPRPPNPP-KPMP--------NPNPNHPSSSGSFSDADLADGVS 84
G+ + G A + G P P P P P +P P P S DG S
Sbjct: 1095 GETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTS 1154
Query: 85 GGEGKGGSDGGGSHRKE-GEEAD--------------APGVIPGIVGAVVVA-----VAG 124
G G G G +R E G E APG G VGA +A AG
Sbjct: 1155 GHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAG 1214
Query: 125 AISSFIAYQKKKLCFKENAEQGEVDMES 152
+ + Y + + FK N ++ ++S
Sbjct: 1215 GFAPY--YGDEPMDFKINTDEIMTSLKS 1240
Score = 27.7 bits (60), Expect = 4.9
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 19/87 (21%)
Query: 33 PGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEG---K 89
PG ++G A + G PP P + A+ A G+ GG G K
Sbjct: 392 PGGKGEMGPAGIPGAPGLMGARGPPGP---------------AGANGAPGLRGGAGEPGK 436
Query: 90 GGSDGGGSHRKEGEEADAPGVIPGIVG 116
G+ G R E EA PGV PG G
Sbjct: 437 NGAKGEPGPRGERGEAGIPGV-PGAKG 462
Score = 26.9 bits (58), Expect = 8.4
Identities = 33/103 (32%), Positives = 38/103 (36%), Gaps = 16/103 (15%)
Query: 13 GLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDP--RPPNPPKPMPN-------- 62
G+ GV A + G D S PG + G A GE P R P P +P
Sbjct: 453 GIPGVPGAKGEDGKDGSPGEPGANGLPGAA---GERGAPGFRGPAGPNGIPGEKGPAGER 509
Query: 63 --PNPNHPSSSGSFSDADLADGVSGGEGKGGSDGG-GSHRKEG 102
P P P + D G G G GS GG GS K G
Sbjct: 510 GAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPG 552
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 37.0 bits (84), Expect = 0.008
Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 13 GLLGVLVAAPDGGFDL---SDALPGDDFDLGDAVVDGENDDPRPPNPPKPM-----PNPN 64
GL G+ DGG + LPG + G G P PP P P NP
Sbjct: 1196 GLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPG 1255
Query: 65 PNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVG 116
P P F G+ G EG G G G + E PG +PG+ G
Sbjct: 1256 PQGPPGRPGF------QGLPGPEGPPGLPGNGGIKGEKGNPGQPG-LPGLPG 1300
Score = 32.3 bits (72), Expect = 0.20
Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 13 GLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPN---PPKPMPNPNPNHPS 69
GL G+ V P G +PG G + GE DP PP P P +P P
Sbjct: 814 GLPGIGVQGPPG----PPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPG 869
Query: 70 SSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVG 116
+ G G G GK G+ G + E PG PG +G
Sbjct: 870 APGPIG----PPGSPGLPGKAGASGFPGTKGEMGMMGPPGP-PGPLG 911
Score = 30.4 bits (67), Expect = 0.76
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 13 GLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSG 72
G LG+ + G D L G G G +P P PP PM +PN S G
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPM---DPNLLGSKG 964
Query: 73 SFSDADL--ADGVSGGEGKGGSDG 94
+ L GVSG +G G G
Sbjct: 965 EKGEPGLPGIPGVSGPKGYQGLPG 988
Score = 29.6 bits (65), Expect = 1.3
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 40 GDAVVDGENDDPRPPNPPKPMPNPN-PNH------PSSSGSFSDADL--ADGVSGGEGKG 90
GD G + P P PP P NP P P G+ D GV G G
Sbjct: 988 GDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPS 1047
Query: 91 GSDG-GGSHRKEGEEADA--PGV----IPGIVG 116
G G GS G++ D PG+ +PG+ G
Sbjct: 1048 GVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPG 1080
Score = 28.9 bits (63), Expect = 2.2
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 15/96 (15%)
Query: 32 LPGDDFDLGDAVVDGE---NDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEG 88
LPGD G+ DGE D PP PP + P P + G + L G+ G +G
Sbjct: 314 LPGDPGYPGEPGRDGEKGQKGDTGPPGPP-GLVIPRPGTGITIGEKGNIGL-PGLPGEKG 371
Query: 89 KGGSDGGGSHRKEGEEADAPGVIPGIVGAVVVAVAG 124
+ G G P +PG GA V+ G
Sbjct: 372 ERGFPG----------IQGPPGLPGPPGAAVMGPPG 397
Score = 28.5 bits (62), Expect = 2.9
Identities = 30/120 (25%), Positives = 40/120 (33%), Gaps = 19/120 (15%)
Query: 16 GVLVAAPDGGFDLSD-------ALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHP 68
G+++ P G + + LPG+ + G + G P PP P P P
Sbjct: 343 GLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFP 402
Query: 69 SSSGSFSDADL----------ADGVSGGEGKGGSDG-GGSHRKEGEEADAPGVIPGIVGA 117
G D DG G G G G G H +E PG PG G+
Sbjct: 403 GERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGP-PGPPGS 461
Score = 27.3 bits (59), Expect = 6.4
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 29 SDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNH-PSSSGSFSDADLADGVSGGE 87
S LPG G GE PP PP P+ P + P G DG+ G
Sbjct: 879 SPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGD-------DGLQGQP 931
Query: 88 GKGGSDGGGSHRKEGEEADAPGVI-PGIVGA 117
G G G + E PG + P ++G+
Sbjct: 932 GLPGPTGEKGSKGEPGLPGPPGPMDPNLLGS 962
Score = 26.9 bits (58), Expect = 8.4
Identities = 27/93 (29%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 25 GFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVS 84
G D LPG + G GE P P P N P P G G+
Sbjct: 579 GQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVG-EKGIQ 637
Query: 85 GGEGKGGSDG-GGSHRKEGEEADAPGVIPGIVG 116
G G G G G G+ PG PG+ G
Sbjct: 638 GVAGNPGQPGIPGPKGDPGQTITQPGK-PGLPG 669
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 36.6 bits (83), Expect = 0.011
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 52 RPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAP 108
R P PP+ P + PS G L +G GG G+GG GGGS +EG P
Sbjct: 138 RRPGPPEEPPRELESVPSKLGE--PPPLGEG-GGGGGEGGGAGGGSGEREGGAPQPP 191
Score = 28.9 bits (63), Expect = 2.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 61 PNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEG 102
P+P+ + + + GV+GG GS GGGS+ KEG
Sbjct: 216 PSPSSSSAGKTPGTGSRNSGSGVAGG----GSGGGGSYWKEG 253
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 36.6 bits (83), Expect = 0.011
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 54 PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGS-HRKEGEEADAPGVIP 112
P P+ N + +P+S + G GG G GG GGGS G A A G
Sbjct: 219 PGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGA 278
Query: 113 GIVGAVVVAVAGA 125
G V A A A A
Sbjct: 279 GAVAAAAAAAAAA 291
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 36.6 bits (83), Expect = 0.011
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 54 PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGS-HRKEGEEADAPGVIP 112
P P+ N + +P+S + G GG G GG GGGS G A A G
Sbjct: 219 PGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGA 278
Query: 113 GIVGAVVVAVAGA 125
G V A A A A
Sbjct: 279 GAVAAAAAAAAAA 291
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 36.6 bits (83), Expect = 0.011
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 54 PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGS-HRKEGEEADAPGVIP 112
P P+ N + +P+S + G GG G GG GGGS G A A G
Sbjct: 219 PGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGA 278
Query: 113 GIVGAVVVAVAGA 125
G V A A A A
Sbjct: 279 GAVAAAAAAAAAA 291
>gi|222831660 family with sequence similarity 171, member A2 [Homo
sapiens]
Length = 826
Score = 36.2 bits (82), Expect = 0.014
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 40 GDAVVDGENDDPRPPN-----PPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDG 94
G+A G D+P PP P + P P+P P G G G G GG +G
Sbjct: 551 GEAGAAGVGDEPAPPEGTAPGPARAFPQPDPQRPQMPGH-------SGPGGEGGGGGGEG 603
Query: 95 GGSHR 99
G+ R
Sbjct: 604 WGAGR 608
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 36.2 bits (82), Expect = 0.014
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 44 VDGENDDPRPPNPPKPMPNP-NPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEG 102
+DG+ PP PP P P P P G+ ADG++G +G GS G + E
Sbjct: 291 IDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPG----ADGLTGPDGSPGSIGSKGQKGE- 345
Query: 103 EEADAPGVIPGIVG 116
PGV PG G
Sbjct: 346 -----PGV-PGSRG 353
Score = 31.2 bits (69), Expect = 0.44
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 32 LPGDDFDLGDAVVDGENDDPRPPNPPKPMPN----------PNPNHPSSSGSFSDADLAD 81
LPG+ +G G P PP PP P PN P SG +
Sbjct: 371 LPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSG-YPGLPGMR 429
Query: 82 GVSGGEGKGGSDGGGSHRKEGEEAD 106
G G +G+ G G H+ GEE D
Sbjct: 430 GHKGAKGEIGEPGRQGHK--GEEGD 452
Score = 27.3 bits (59), Expect = 6.4
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 32 LPGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGG 91
LPG D G VDG + P P P P P +G G+ G +G G
Sbjct: 530 LPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGP--PGDAG-LQGLPGVPGIPGAKGVAG 586
Query: 92 SDGG-GSHRKEGEEADA--PGV--IPGIVG 116
G G+ K G+ ++ PG PG VG
Sbjct: 587 EKGSTGAPGKPGQMGNSGKPGQQGPPGEVG 616
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,532,838
Number of Sequences: 37866
Number of extensions: 552795
Number of successful extensions: 8260
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 338
Number of HSP's that attempted gapping in prelim test: 5703
Number of HSP's gapped (non-prelim): 2224
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.