Guide to the Human Genome
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Name: ABCC1 Sequence: fasta or formatted (1416aa) NCBI GI: 134142342
Description:

ATP-binding cassette, sub-family C, member 1 isoform 4

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [1466aa] ATP-binding cassette, sub-family C, member 1 isoform 5
alt prot [1531aa] ATP-binding cassette, sub-family C, member 1 isoform 1
alt prot [1472aa] ATP-binding cassette, sub-family C, member 1 isoform 2
alt prot [1475aa] ATP-binding cassette, sub-family C, member 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1        101           2
 C cysteine            1.6         23           1
 D aspartate           4.3         61           2
 E glutamate           5.4         77           2
 F phenylalanine       5.2         73           3
 G glycine             5.4         77           3
 H histidine           1.6         23           2
 I isoleucine          6.6         93           3
 K lysine              5.2         73           2
 L leucine            11.9        169           3
 M methionine          2.7         38           2
 N asparagine          3.5         49           2
 P proline             3.7         52           2
 Q glutamine           3.7         53           2
 R arginine            4.5         64           2
 S serine              8.5        120           5
 T threonine           5.4         76           2
 V valine              8.5        121           2
 W tryptophan          2.0         29           2
 Y tyrosine            3.1         44           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family C, member 1 isofor... 
ABCC1                 0.961   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.931   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.501   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.501   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC3                 0.283   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC2                 0.249   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC6                 0.220   ATP-binding cassette, sub-family C, member 6 isofor...
LOC100292715          0.220   PREDICTED: hypothetical protein 
ABCC3                 0.203   ATP-binding cassette, sub-family C, member 3 isofor...
ABCC4                 0.169   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC5                 0.162   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC8                 0.156   ATP-binding cassette, sub-family C, member 8 
ABCC9                 0.156   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.152   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.152   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC12                0.145   ATP-binding cassette protein C12 
ABCC11                0.136   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.136   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC10                0.134   ATP-binding cassette, sub-family C, member 10 
ABCC11                0.116   ATP-binding cassette, sub-family C, member 11 isofor...
CFTR                  0.090   cystic fibrosis transmembrane conductance regulator ...
ABCC4                 0.077   ATP-binding cassette, sub-family C, member 4 isofor...
ABCB10                0.055   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB1                 0.051   ATP-binding cassette, subfamily B, member 1 
ABCB11                0.050   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB9                 0.049   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.049   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB8                 0.047   ATP-binding cassette, sub-family B, member 8 
TAP2                  0.046   transporter 2, ATP-binding cassette, sub-family B is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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