Guide to the Human Genome
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Name: KCNK13 Sequence: fasta or formatted (408aa) NCBI GI: 16306555
Description:

potassium channel, subfamily K, member 13

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         34           2
 C cysteine            3.4         14           2
 D aspartate           3.7         15           1
 E glutamate           4.7         19           2
 F phenylalanine       6.1         25           2
 G glycine             8.8         36           2
 H histidine           1.7          7           1
 I isoleucine          6.4         26           2
 K lysine              2.5         10           1
 L leucine            11.0         45           3
 M methionine          2.9         12           1
 N asparagine          4.4         18           2
 P proline             2.2          9           1
 Q glutamine           3.4         14           1
 R arginine            7.6         31           3
 S serine              8.6         35           2
 T threonine           4.2         17           2
 V valine              5.4         22           2
 W tryptophan          1.5          6           1
 Y tyrosine            3.2         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel, subfamily K, member 13 
KCNK12                0.621   potassium channel, subfamily K, member 12 
KCNK3                 0.136   potassium channel, subfamily K, member 3 
KCNK9                 0.130   potassium channel, subfamily K, member 9 
KCNK15                0.115   potassium family, subfamily K, member 15 
KCNK1                 0.110   potassium channel, subfamily K, member 1 
KCNK16                0.106   potassium channel, subfamily K, member 16 isoform 2 ...
KCNK10                0.104   potassium channel, subfamily K, member 10 isoform 3 ...
KCNK10                0.104   potassium channel, subfamily K, member 10 isoform 2 ...
KCNK10                0.104   potassium channel, subfamily K, member 10 isoform 1 ...
KCNK16                0.104   potassium channel, subfamily K, member 16 isoform 3...
KCNK4                 0.098   TRAAK 
KCNK2                 0.096   potassium channel, subfamily K, member 2 isoform b [...
KCNK2                 0.096   potassium channel, subfamily K, member 2 isoform c ...
KCNK2                 0.096   potassium channel, subfamily K, member 2 isoform a [...
KCNK16                0.094   potassium channel, subfamily K, member 16 isoform 4...
KCNK16                0.094   potassium channel, subfamily K, member 16 isoform 1...
KCNK5                 0.089   potassium channel, subfamily K, member 5 
KCNK6                 0.088   potassium channel, subfamily K, member 6 
KCNK17                0.074   potassium channel, subfamily K, member 17 isoform 1 ...
KCNK17                0.068   potassium channel, subfamily K, member 17 isoform 2...
KCNK7                 0.038   potassium channel, subfamily K, member 7 isoform A [...
KCNK7                 0.036   potassium channel, subfamily K, member 7 isoform C [H...
KCNK7                 0.036   potassium channel, subfamily K, member 7 isoform B [...
KCNK7                 0.036   potassium channel, subfamily K, member 7 isoform B [...
KCNK18                0.026   potassium channel, subfamily K, member 18 
KCNT2                 0.018   potassium channel, subfamily T, member 2 
KCNT1                 0.016   potassium channel, subfamily T, member 1 
VIPR2                 0.010   vasoactive intestinal peptide receptor 2 
KCNU1                 0.010   potassium channel, subfamily U, member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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