Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCNK4 Sequence: fasta or formatted (393aa) NCBI GI: 15718767
Description:

TRAAK

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         37           2
 C cysteine            1.5          6           1
 D aspartate           3.6         14           1
 E glutamate           4.8         19           1
 F phenylalanine       4.6         18           3
 G glycine             8.7         34           3
 H histidine           1.5          6           1
 I isoleucine          4.1         16           2
 K lysine              2.0          8           1
 L leucine            12.5         49           2
 M methionine          1.0          4           1
 N asparagine          1.5          6           1
 P proline            10.4         41           4
 Q glutamine           3.3         13           2
 R arginine            7.6         30           3
 S serine              6.6         26           2
 T threonine           5.9         23           2
 V valine              6.9         27           2
 W tryptophan          1.8          7           1
 Y tyrosine            2.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TRAAK 
KCNK10                0.374   potassium channel, subfamily K, member 10 isoform 3 ...
KCNK10                0.374   potassium channel, subfamily K, member 10 isoform 2 ...
KCNK10                0.374   potassium channel, subfamily K, member 10 isoform 1 ...
KCNK2                 0.372   potassium channel, subfamily K, member 2 isoform b [...
KCNK2                 0.372   potassium channel, subfamily K, member 2 isoform c ...
KCNK2                 0.372   potassium channel, subfamily K, member 2 isoform a [...
KCNK16                0.206   potassium channel, subfamily K, member 16 isoform 3...
KCNK16                0.206   potassium channel, subfamily K, member 16 isoform 2 ...
KCNK17                0.183   potassium channel, subfamily K, member 17 isoform 1 ...
KCNK16                0.179   potassium channel, subfamily K, member 16 isoform 4...
KCNK16                0.179   potassium channel, subfamily K, member 16 isoform 1...
KCNK5                 0.177   potassium channel, subfamily K, member 5 
KCNK6                 0.161   potassium channel, subfamily K, member 6 
KCNK17                0.155   potassium channel, subfamily K, member 17 isoform 2...
KCNK1                 0.154   potassium channel, subfamily K, member 1 
KCNK9                 0.123   potassium channel, subfamily K, member 9 
KCNK3                 0.121   potassium channel, subfamily K, member 3 
KCNK15                0.115   potassium family, subfamily K, member 15 
KCNK13                0.101   potassium channel, subfamily K, member 13 
KCNK12                0.097   potassium channel, subfamily K, member 12 
KCNK7                 0.086   potassium channel, subfamily K, member 7 isoform A [...
KCNK7                 0.085   potassium channel, subfamily K, member 7 isoform C [H...
KCNK7                 0.084   potassium channel, subfamily K, member 7 isoform B [...
KCNK7                 0.084   potassium channel, subfamily K, member 7 isoform B [...
KCNK18                0.043   potassium channel, subfamily K, member 18 
PRB1                  0.036   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.034   proline-rich protein BstNI subfamily 2 
FMN1                  0.032   formin 1 
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press