Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 170016023
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|170016023 hypothetical protein LOC100130613 [Homo sapiens]
(298 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|170016023 hypothetical protein LOC100130613 [Homo sapiens] 640 0.0
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 45 1e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 2e-04
gi|11386183 WAS protein family, member 2 [Homo sapiens] 40 0.002
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.002
gi|7706501 WW domain binding protein 11 [Homo sapiens] 40 0.002
gi|11415052 retinoid X receptor, beta [Homo sapiens] 40 0.003
gi|123701326 zinc finger protein 831 [Homo sapiens] 39 0.004
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 39 0.006
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 39 0.007
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 39 0.007
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 38 0.009
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 38 0.012
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 37 0.016
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 37 0.016
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 37 0.021
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 37 0.021
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 37 0.021
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi... 37 0.021
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 37 0.021
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 37 0.021
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 37 0.021
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi... 37 0.021
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 37 0.021
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s... 37 0.021
gi|150417989 cyclin K isoform 1 [Homo sapiens] 37 0.021
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 37 0.027
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 37 0.027
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 37 0.027
gi|18677735 proline-rich coiled-coil 1 [Homo sapiens] 36 0.036
>gi|170016023 hypothetical protein LOC100130613 [Homo sapiens]
Length = 298
Score = 640 bits (1651), Expect = 0.0
Identities = 298/298 (100%), Positives = 298/298 (100%)
Query: 1 MACIENVLGGHAPSPLVVSVDKNGNQELHHDMPLQCLSSKPEDDAEPWGQPQVPLRPSVN 60
MACIENVLGGHAPSPLVVSVDKNGNQELHHDMPLQCLSSKPEDDAEPWGQPQVPLRPSVN
Sbjct: 1 MACIENVLGGHAPSPLVVSVDKNGNQELHHDMPLQCLSSKPEDDAEPWGQPQVPLRPSVN 60
Query: 61 VLTDLDSKQLEWPSERTGSCIPLHSLRAHRHPYGPPPAVAEESLATAEVNSSDALAGWRQ 120
VLTDLDSKQLEWPSERTGSCIPLHSLRAHRHPYGPPPAVAEESLATAEVNSSDALAGWRQ
Sbjct: 61 VLTDLDSKQLEWPSERTGSCIPLHSLRAHRHPYGPPPAVAEESLATAEVNSSDALAGWRQ 120
Query: 121 EGQDAINVSWEVSGGPPALIVGGTKVNNGGTERGSNNARLHVALPQGKGFFPPRGPQVRG 180
EGQDAINVSWEVSGGPPALIVGGTKVNNGGTERGSNNARLHVALPQGKGFFPPRGPQVRG
Sbjct: 121 EGQDAINVSWEVSGGPPALIVGGTKVNNGGTERGSNNARLHVALPQGKGFFPPRGPQVRG 180
Query: 181 PSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTPGLPS 240
PSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTPGLPS
Sbjct: 181 PSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTPGLPS 240
Query: 241 CSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAPASPNREHS 298
CSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAPASPNREHS
Sbjct: 241 CSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAPASPNREHS 298
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 44.7 bits (104), Expect = 1e-04
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 10/151 (6%)
Query: 148 NGGTERGSNNARLHVALPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGK 207
+G + RG+ A H + P+ KG R PQV P G P ++ +A
Sbjct: 246 SGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALG-----PLSSSPLATPSP 300
Query: 208 LAHVSFPLRGPCHPMHNWPRPIPLSSSTPGL--PSCSTVHCFIPPRP--PIFNPFLTMPL 263
A S P P P P S +T L P+ H F+P P P+ P P
Sbjct: 301 SAPPS-PSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPP 359
Query: 264 PFAPPPIFGPPLPSYFAHFHSGGMPAPASPN 294
A PP+ PP P P+P +PN
Sbjct: 360 ALALPPLQAPPSPPASPPLSPLATPSPQAPN 390
Score = 35.4 bits (80), Expect = 0.061
Identities = 64/245 (26%), Positives = 82/245 (33%), Gaps = 43/245 (17%)
Query: 63 TDLDSKQLEWPSERTGSCIPLH-------SLRAHRHPYGPPPAVAEESLATAEVNSSD-A 114
T L S PS R P H L+A R P PP + + A ++SS A
Sbjct: 238 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR-KDAAPALGPLSSSPLA 296
Query: 115 LAGWRQEGQDAINVSWEVSGGPPALIVGGTKVNNGGTERGSNNARL-HVALPQGKGFFPP 173
+ S + PPA T + T GS + H LP PP
Sbjct: 297 TPSPSAPPSPSAPPSLQTLPSPPA-----TPPSQATTSLGSPTLQATHSFLPS-----PP 346
Query: 174 RGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVS---------FPLRGPCHPMHN 224
P P P + ++ PP LA S L+ P P +
Sbjct: 347 LSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPS 406
Query: 225 WPRPIPLS---------SSTP---GLPSCSTVHCFIPPRPPIFNPFL--TMPLPFAPPPI 270
P P S S+TP PS + +PP PP P P P APPP+
Sbjct: 407 PPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPL 466
Query: 271 FGPPL 275
PPL
Sbjct: 467 AAPPL 471
Score = 33.1 bits (74), Expect = 0.30
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 21/100 (21%)
Query: 214 PLRGPCHPMHNWPRPIPLSSSTPGLPSCSTVHCFI-----PPRPPIFNPFLTMPLP---- 264
PL+ P P + P PL++ +P P+ VH PP PP+ PF P
Sbjct: 365 PLQAPPSPPASPPLS-PLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSP 423
Query: 265 -----------FAPPPIFGPPLPSYFAHFHSGGMPAPASP 293
A PP+ PP P P P +P
Sbjct: 424 SATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 463
Score = 30.0 bits (66), Expect = 2.6
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 27/130 (20%)
Query: 170 FFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPI 229
F PP P V+ P P PP + PL+ P P P
Sbjct: 401 FSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP------PLQVPPSP----PASP 450
Query: 230 PLS-SSTPGLPSCSTVHCFIPPR--PPIFNPFLTM--PLPFAPPPIFGPPLPSYFAHFHS 284
P+S S+TP PP+ PP+ P L + P P APP + PPL + + S
Sbjct: 451 PMSPSATP------------PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPAS 498
Query: 285 GGMPAPASPN 294
AP SP+
Sbjct: 499 FPGQAPFSPS 508
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 43.5 bits (101), Expect = 2e-04
Identities = 43/178 (24%), Positives = 65/178 (36%), Gaps = 34/178 (19%)
Query: 148 NGGTERGSNNARLHVALPQGKGF--------FPPR-------GPQVRGPSHIPTLRSGIV 192
+G + RG+ A H + P+ KG PPR GP P P+ + +
Sbjct: 255 SGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQ 314
Query: 193 MEVPPG------NTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTP--------GL 238
+ PP ++ + C+ PL P + +P +TP G
Sbjct: 315 SQAPPTLPATPHSSSLTCQ---LATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGS 371
Query: 239 PSCSTVHCFIPPRP--PIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAPASPN 294
P+ H F+P P P+ P P A PP+ PP P P+P +PN
Sbjct: 372 PTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPN 429
Score = 35.0 bits (79), Expect = 0.080
Identities = 65/251 (25%), Positives = 86/251 (34%), Gaps = 49/251 (19%)
Query: 51 PQV--PLRPSVNVLTDLDSKQLEWPSERTGSCIPLHSLRAHRHPYGPPPAVAEESLATAE 108
PQV P + + L L S L PS P +L++ P PA S T +
Sbjct: 283 PQVTPPRKDAAPALGPLSSSPLATPS-------PSAALQSQAPP--TLPATPHSSSLTCQ 333
Query: 109 VNSSDALAGWRQEGQDAINVSWEVSGGPPALIVGGTKVNNGGTERGSNNARL-HVALPQG 167
+ + LA + S + PPA T + T GS + H LP
Sbjct: 334 LATPLPLA----PPSPSAPPSLQTLPSPPA-----TPPSQATTSLGSPTLQATHSFLPS- 383
Query: 168 KGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVS---------FPLRGP 218
PP P P P + ++ PP LA S L+ P
Sbjct: 384 ----PPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAP 439
Query: 219 CHPMHNWPRPIPLS---------SSTP---GLPSCSTVHCFIPPRPPIFNPFL--TMPLP 264
P + P P S S+TP PS + +PP PP P P P
Sbjct: 440 FSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP 499
Query: 265 FAPPPIFGPPL 275
APPP+ PPL
Sbjct: 500 QAPPPLAAPPL 510
Score = 33.1 bits (74), Expect = 0.30
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 21/100 (21%)
Query: 214 PLRGPCHPMHNWPRPIPLSSSTPGLPSCSTVHCFI-----PPRPPIFNPFLTMPLP---- 264
PL+ P P + P PL++ +P P+ VH PP PP+ PF P
Sbjct: 404 PLQAPPSPPASPPLS-PLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSP 462
Query: 265 -----------FAPPPIFGPPLPSYFAHFHSGGMPAPASP 293
A PP+ PP P P P +P
Sbjct: 463 SATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 502
Score = 30.0 bits (66), Expect = 2.6
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 27/130 (20%)
Query: 170 FFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPI 229
F PP P V+ P P PP + PL+ P P P
Sbjct: 440 FSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP------PLQVPPSP----PASP 489
Query: 230 PLS-SSTPGLPSCSTVHCFIPPR--PPIFNPFLTM--PLPFAPPPIFGPPLPSYFAHFHS 284
P+S S+TP PP+ PP+ P L + P P APP + PPL + + S
Sbjct: 490 PMSPSATP------------PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPAS 537
Query: 285 GGMPAPASPN 294
AP SP+
Sbjct: 538 FPGQAPFSPS 547
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 40.4 bits (93), Expect = 0.002
Identities = 38/131 (29%), Positives = 46/131 (35%), Gaps = 19/131 (14%)
Query: 166 QGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNW 225
+G G P+ V PSH P PP + + A P P +
Sbjct: 282 RGSGLAGPKRSSVVSPSHPPP--------APPLGSPPGPKPGFAPPPAPPPPPPPMIGIP 333
Query: 226 PRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNP---FLTMPLPFAPPPIFGPPLPSYFAHF 282
P P P+ +PG P PP PP F P F P P PP P LP
Sbjct: 334 PPPPPVGFGSPGTPP--------PPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQ 385
Query: 283 HSGGMPAPASP 293
+GG P P P
Sbjct: 386 PTGGAPPPPPP 396
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 27/135 (20%)
Query: 148 NGGTERGSNNARLHVALPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGK 207
+G + RG+ A H + P+ KG R PQV PP G
Sbjct: 255 SGPSARGTPRAPAHPSQPKPKGLQALRPPQV----------------TPPRKDAAPALGP 298
Query: 208 LAHVSFPLRGPCHPMHNWPRPIP--------LSSSTPGLPSCSTVHCFIPPRPPIFNPFL 259
L+ S PL P P RP+P L ++ P P +T PP P
Sbjct: 299 LS--SSPLATPS-PSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQ 355
Query: 260 TMPLPFAPPPIFGPP 274
T+P P A PP PP
Sbjct: 356 TLPSPPATPPSQAPP 370
Score = 39.3 bits (90), Expect = 0.004
Identities = 62/265 (23%), Positives = 86/265 (32%), Gaps = 61/265 (23%)
Query: 33 PLQCLSSKPEDDAEPWGQPQVPLRPSVNVLTDLDSKQLEWPSERTGSCIPLHSLRAHRHP 92
PL L++ P P + PS L L PS + + + +H L+A P
Sbjct: 610 PLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSP--LATPSPQAPNALAVHLLQA---P 664
Query: 93 YGPPPAVAEESLATAEVNSSDALAGWRQEGQDAINVS-WEVSGGPPALIVGGTKVNNGGT 151
+ PPP S A + ++ S S PP+L +V
Sbjct: 665 FSPPP-------------SPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQV----- 706
Query: 152 ERGSNNARLHVALPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHV 211
P PP P P P + ++VPP
Sbjct: 707 -------------PPSPPASPPMSPSATPPPQAPPPLAAPPLQVPP-------------- 739
Query: 212 SFPLRGPCHPMHNWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPF--LTMPLPFAPPP 269
S P P P P +P + P L +PP PP P L P P APP
Sbjct: 740 SPPASPPMSPSATPPPRVPPLLAAPPLQ--------VPPSPPASLPMSPLAKPPPQAPPA 791
Query: 270 IFGPPLPSYFAHFHSGGMPAPASPN 294
+ PPL + + S AP SP+
Sbjct: 792 LATPPLQALPSPPASFPGQAPFSPS 816
Score = 36.6 bits (83), Expect = 0.027
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 22/95 (23%)
Query: 214 PLRGPCHPMHNWPRPIPLSSSTP--------------GLPSCSTVHCFIPPRPPIFNPFL 259
PL+ P P+ P P S +TP GLPS PP P+ P
Sbjct: 568 PLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPS--------PPLSPLATPPP 619
Query: 260 TMPLPFAPPPIFGPPLPSYFAHFHSGGMPAPASPN 294
P A PP+ PP P P+P +PN
Sbjct: 620 QAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPN 654
Score = 35.4 bits (80), Expect = 0.061
Identities = 62/276 (22%), Positives = 96/276 (34%), Gaps = 30/276 (10%)
Query: 37 LSSKPEDDAEPWGQPQVPLRPSVNVLTDLDSKQLEWPSERTGSCIPLH--------SLRA 88
LSS P P G P+ P N T L + PS + +PL SL+
Sbjct: 299 LSSSPLATPSPSGTKARPVPPPDNAATPLPATLP--PSPPLATPLPLAPPSPSAPPSLQT 356
Query: 89 HRHPYGPPPAVAEESLATAEVNSSDALAGWR--QEGQDAINVSWEVSGGPPALIVGGTKV 146
P PP+ A S+ T + + +L Q + S + P AL
Sbjct: 357 LPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATT 416
Query: 147 NNGGTERGSNNARLHVA---------LPQGKGFFPPRGPQVRGPSHIPT---LRSGIVME 194
+ G + ++ L ++ P PP P ++ P +P L++ +
Sbjct: 417 SLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPA 476
Query: 195 VPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTPGLPSCSTVHCFIPPRPPI 254
V P ++ + A S P P+ + P + S+ PS T PP
Sbjct: 477 VSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQT-----PPASLT 531
Query: 255 FNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAP 290
P +P APPP+ P H + PAP
Sbjct: 532 TPPLENLP-SLAPPPLQTASAPLTTPHLETPPCPAP 566
Score = 35.4 bits (80), Expect = 0.061
Identities = 58/215 (26%), Positives = 76/215 (35%), Gaps = 35/215 (16%)
Query: 67 SKQLEWPSERTGSCIPLHSLRAHRHPYGPPPAVAEESLATAEVNSSDALAGWRQEGQDAI 126
S L P T C L+A P PP S+AT + ALA +G +
Sbjct: 550 SAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSP 609
Query: 127 NVSWEVSGGPPALIVGGTKVNNGGTERGSNNARLHVALPQGKGFFPPRGPQVRGPSHIPT 186
+S ++ PP A +ALP P + P P P
Sbjct: 610 PLS-PLATPPP-------------------QAPPXLALP------PLQAPP--SPPASPP 641
Query: 187 LRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLS-SSTP---GLPSCS 242
L S + P +A A S P P + P P+S S+TP PS +
Sbjct: 642 L-SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLA 700
Query: 243 TVHCFIPPRPPIFNPF--LTMPLPFAPPPIFGPPL 275
+PP PP P P P APPP+ PPL
Sbjct: 701 APPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPL 735
Score = 28.1 bits (61), Expect = 9.8
Identities = 33/122 (27%), Positives = 42/122 (34%), Gaps = 18/122 (14%)
Query: 176 PQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLSS-- 233
P PS P + M+ PP I V L P + P P+ LSS
Sbjct: 360 PPATPPSQAPPSMTTPPMQAPPSLQTIPP----IQVPHSLTSPS--LQAPPSPLALSSLQ 413
Query: 234 --STPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAPA 291
++ G P+ H F+ P LT P A P PPL + PA
Sbjct: 414 ATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPL--------QAPLSLPA 465
Query: 292 SP 293
SP
Sbjct: 466 SP 467
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 40.0 bits (92), Expect = 0.002
Identities = 38/115 (33%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 164 LPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH 223
LP G PP P P +P LR + +PPG G P P P
Sbjct: 430 LPPGP---PPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGP--PPGLPPGPPP 484
Query: 224 NWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGP-PLPS 277
P P + PG+P PPRP + P L PL APP +F P PLP+
Sbjct: 485 RGPPPRLPPPAPPGIP---------PPRPGMMRPPLVPPLGPAPPGLFPPAPLPN 530
Score = 32.7 bits (73), Expect = 0.40
Identities = 39/123 (31%), Positives = 42/123 (34%), Gaps = 21/123 (17%)
Query: 172 PPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFP-LRGPCHPMHNWPRPIP 230
PP GP P P +G+ PPG L P LRGP PR +P
Sbjct: 411 PPLGPPPAPPLRPPGPPTGLPPGPPPGAPPF-----LRPPGMPGLRGPL------PRLLP 459
Query: 231 LSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAP 290
PG P PP PP P P P PPP PP P G M P
Sbjct: 460 -PGPPPGRPPGP------PPGPPPGLP--PGPPPRGPPPRLPPPAPPGIPPPRPGMMRPP 510
Query: 291 ASP 293
P
Sbjct: 511 LVP 513
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 221 PMHNWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFL----TMPLPFAPPPIFGPPLP 276
P + P P+P P P PP PP P L P P PPP G P P
Sbjct: 83 PDSSSPNPLPQGVPPPSPPG--------PPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFP 134
Query: 277 SYFAHFHSGGMPAPASP 293
+ S G+P PA P
Sbjct: 135 VISSSMGSPGLPPPAPP 151
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 39.3 bits (90), Expect = 0.004
Identities = 47/178 (26%), Positives = 69/178 (38%), Gaps = 27/178 (15%)
Query: 82 PLH---SLRAHRHPYGPPPAVAEESLATAEVNSSDALAGWRQEGQDAINVSWEVSGGPPA 138
P+H S A P+G PPA+ E SL T + +A R+ D V VS PA
Sbjct: 679 PVHEDISAGATPEPWGNPPAL-EASLVTEPTKHGETVA--RRGDSDRPRVEEAVSS--PA 733
Query: 139 LIVGGTKVNNGGTERGSNNARLHVALPQGKGFFPPRGPQVRGPSHI---PTLRSGIVMEV 195
L + + + S N RL + P +G V P + P L G
Sbjct: 734 LGGRDSPCSGSRSPLVSPNGRLELGWQMPPAPGPLKGGDVEAPRPVWPDPKLEGGAR--- 790
Query: 196 PPGNTRIACRGKLAHVSFPLRGP-------------CHPMHNWPRPIPLSSSTPGLPS 240
G+ + C + +P RG +H+W +P P+S+ TPG P+
Sbjct: 791 GVGDVQETCLWAQTVLRWPSRGSGEDKLPSERKKLKVEDLHSWKQPEPVSAETPGGPT 848
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 38.9 bits (89), Expect = 0.006
Identities = 53/209 (25%), Positives = 77/209 (36%), Gaps = 28/209 (13%)
Query: 96 PPAVAEESLATAEVNSSDALAGWRQEGQDAINVSWEVSGGPPAL--IVGGTKV----NNG 149
PP +A + A A + + G G+D + GPP G + + G
Sbjct: 243 PPGLA--AAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG 300
Query: 150 GTERGSNNARLHVALPQGKGFF-PPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKL 208
G RG +R+ + P K PRG GP P L+ G + + P + A
Sbjct: 301 GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAA 360
Query: 209 AHVSFPLRGPCHPMHNWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPL---PF 265
A L+ ++ + P +P P P R P +P L PL P+
Sbjct: 361 A-----LKAAEAAPRDFCQRFPALEPSPRQP---------PARAPRPSPDLPAPLDACPW 406
Query: 266 APPPIFGPPLPSYFAHFHSG--GMPAPAS 292
APP P P +A + S PAP S
Sbjct: 407 APPVYAPPAAPGPYAAWTSSRPARPAPLS 435
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 38.5 bits (88), Expect = 0.007
Identities = 38/144 (26%), Positives = 50/144 (34%), Gaps = 26/144 (18%)
Query: 172 PPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPL 231
PP P P P L S ++ P ++ G L + P+ P P P P P
Sbjct: 175 PPPTPPPPPPPLPPPLPSSSPIKTP----LVSPPGPLTKGNLPVVAPPVPCAPPPPPPPP 230
Query: 232 SSSTPGLPSCSTVH--CFIPPRPPIFNPFLTMPLPFAPP--------------------P 269
+ P LP S + P P+ P + PLP PP P
Sbjct: 231 PPTPPPLPPASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGLKAEPASPAQDAQEPP 290
Query: 270 IFGPPLPSYFAHFHSGGMPAPASP 293
PPLP Y + +PAP P
Sbjct: 291 APPPPLPPYASCSPRASLPAPPLP 314
Score = 35.8 bits (81), Expect = 0.047
Identities = 58/216 (26%), Positives = 80/216 (37%), Gaps = 38/216 (17%)
Query: 92 PYGPPPAVAEESLATAEVNSSDALAGWRQEGQDAINVSWEVSGGPPALIVG-GTKVNNGG 150
P PP + SL A+ AL Q+G V+ P + GT GG
Sbjct: 26 PSAPPVSTDTSSLRRADPKGRSALLADIQQGTRLRKVTQINDRSAPQIESSKGTNKEGGG 85
Query: 151 TE--RGSNN---------ARLHVALPQGK----GFFPPRGPQVRGPSHIPTLRSGIVME- 194
+ RG++ V P G+ G +GP R PS P L + +
Sbjct: 86 SANTRGASTPPTLGDLFAGGFPVLRPAGQRDVAGGKTGQGPGSRAPS--PRLPNKTISGP 143
Query: 195 -VPPGNTRI--------ACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTPGLPSCSTVH 245
+PP + R+ A R + P P P P P PL P LPS S +
Sbjct: 144 LIPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPP---PPPPPLP---PPLPSSSPIK 197
Query: 246 C-FIPPRPPIFN---PFLTMPLPFAPPPIFGPPLPS 277
+ P P+ P + P+P APPP PP P+
Sbjct: 198 TPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPT 233
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 38.5 bits (88), Expect = 0.007
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 172 PPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPL 231
PPR P V P P + VPPG+ P P P+ WP P+
Sbjct: 253 PPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPV 312
Query: 232 SSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPL 275
+ P P +PP PP+ P+ PP GPP+
Sbjct: 313 PTGPPMAP--------VPPGPPMARVPPGPPMARVPP---GPPM 345
Score = 30.4 bits (67), Expect = 2.0
Identities = 32/118 (27%), Positives = 39/118 (33%), Gaps = 35/118 (29%)
Query: 171 FPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIP 230
+PP P GP P + VPPG PM P P
Sbjct: 306 WPPMAPVPTGPPMAPVPPGPPMARVPPG---------------------PPMARVPPGPP 344
Query: 231 LSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMP 288
++ PG P +PP PP+ PLP PP PLP H+G P
Sbjct: 345 MAPLPPGPPMAP-----LPPGPPM------APLPPGPPM---APLPPRSHVPHTGLAP 388
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 38.1 bits (87), Expect = 0.009
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 216 RGPCHPMHNWPRPIPL--SSSTPGLPSC-------------STVHCFIPPRPP---IFNP 257
R P P + P P P+ SS T G P+ + F+PP PP + +P
Sbjct: 507 RAPHAPKSSLPPPPPVRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDP 566
Query: 258 FLTMPLP--FAPPPIFGPPLPSYFAHFHSGGMPAPASP 293
L P P PPP F PP P +A +P P P
Sbjct: 567 ELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPPPP 604
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 37.7 bits (86), Expect = 0.012
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 126 INVSWEVSGGPPALIVGGTKVNNGGTERGSNNARLHVALPQGKGFFPPRGPQVRGPSHIP 185
+N S+ + G PA+++ G V G G ++ L L G G PP P +G S
Sbjct: 323 VNGSFLAASGSPAVLLNGGPVIINGLALGEASS-LGPLLLTGGGGAPPPQPSPQGASETK 381
Query: 186 TLRSGIVMEVPPGNTRI------ACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTPGLP 239
T +V++ G R+ A K A V+ P GP PL+ PG P
Sbjct: 382 T---SLVLDPQTGEVRLEEAQSEAPETKGAQVAAP--GPALGEEVLG---PLAQVVPGPP 433
Query: 240 SCSTVHCFIPPRPPIFNPFLTMP--LPFAPPP 269
+ +T P PP P + P +P +PPP
Sbjct: 434 TAATF-----PLPPGPVPAVAAPQVVPLSPPP 460
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 37.4 bits (85), Expect = 0.016
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 172 PPRGPQVRGPSHIPTLRSGIVMEVPPGNTR--IACRGKLAHVSFPLRGPCHPMHNWPRPI 229
PP P V + P++ V PP N + + + + S P P P P+
Sbjct: 265 PPPPPPV---GNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPL 321
Query: 230 PLSSS----TPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSG 285
P SSS TP LP + PP+ +P + PLP PPP PP P SG
Sbjct: 322 PPSSSGNDETPRLPQRNL--SLSSSTPPLPSPGRSGPLP--PPPSERPPPPVRDPPGRSG 377
Query: 286 GMPAPASPNREHS 298
+P P +R S
Sbjct: 378 PLPPPPPVSRNGS 390
Score = 29.6 bits (65), Expect = 3.4
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 167 GKGFFPPRGPQVRG---PSHIPTLRSGIVMEVPPGNTR--IACRGKLAHVSFPLRGPCHP 221
G G F GP G + +P LRS + G +R + G + + P P P
Sbjct: 88 GGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGP 147
Query: 222 MHNWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAH 281
+P P P S P P + + PPRP + + ++P PP+ P P +
Sbjct: 148 -GRFPVPSPGHRSGPPEPQRNRMP---PPRPDVGSKPDSIP-----PPVPSTPRPIQSSP 198
Query: 282 FHSGGMPAPASPNR 295
+ G P P P +
Sbjct: 199 HNRGSPPVPGGPRQ 212
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 37.4 bits (85), Expect = 0.016
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 172 PPRGPQVRGPSHIPTLRSGIVMEVPPGNTR--IACRGKLAHVSFPLRGPCHPMHNWPRPI 229
PP P V + P++ V PP N + + + + S P P P P+
Sbjct: 265 PPPPPPV---GNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPL 321
Query: 230 PLSSS----TPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSG 285
P SSS TP LP + PP+ +P + PLP PPP PP P SG
Sbjct: 322 PPSSSGNDETPRLPQRNL--SLSSSTPPLPSPGRSGPLP--PPPSERPPPPVRDPPGRSG 377
Query: 286 GMPAPASPNREHS 298
+P P +R S
Sbjct: 378 PLPPPPPVSRNGS 390
Score = 29.6 bits (65), Expect = 3.4
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 167 GKGFFPPRGPQVRG---PSHIPTLRSGIVMEVPPGNTR--IACRGKLAHVSFPLRGPCHP 221
G G F GP G + +P LRS + G +R + G + + P P P
Sbjct: 88 GGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGP 147
Query: 222 MHNWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAH 281
+P P P S P P + + PPRP + + ++P PP+ P P +
Sbjct: 148 -GRFPVPSPGHRSGPPEPQRNRMP---PPRPDVGSKPDSIP-----PPVPSTPRPIQSSP 198
Query: 282 FHSGGMPAPASPNR 295
+ G P P P +
Sbjct: 199 HNRGSPPVPGGPRQ 212
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 37.0 bits (84), Expect = 0.021
Identities = 39/114 (34%), Positives = 42/114 (36%), Gaps = 28/114 (24%)
Query: 164 LPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH 223
LP PP P P P S + PP + S PL P P
Sbjct: 1747 LPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPP----------SIPL--PLPP-- 1792
Query: 224 NWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPS 277
P PLS ST G PP PP+ PF T PLP PP I PP PS
Sbjct: 1793 --PTFFPLSVSTSG-----------PPTPPLLPPFPT-PLPPPPPSIPCPPPPS 1832
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 239 PSCSTVHCFIPPRPPIFNPF-LTMPLPFAPPPIFGP 273
P+ S C +PP PPI P P P APPP P
Sbjct: 1738 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISP 1773
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 37.0 bits (84), Expect = 0.021
Identities = 39/114 (34%), Positives = 42/114 (36%), Gaps = 28/114 (24%)
Query: 164 LPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH 223
LP PP P P P S + PP + S PL P P
Sbjct: 1724 LPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPP----------SIPL--PLPP-- 1769
Query: 224 NWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPS 277
P PLS ST G PP PP+ PF T PLP PP I PP PS
Sbjct: 1770 --PTFFPLSVSTSG-----------PPTPPLLPPFPT-PLPPPPPSIPCPPPPS 1809
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 239 PSCSTVHCFIPPRPPIFNPF-LTMPLPFAPPPIFGP 273
P+ S C +PP PPI P P P APPP P
Sbjct: 1715 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISP 1750
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 37.0 bits (84), Expect = 0.021
Identities = 39/114 (34%), Positives = 42/114 (36%), Gaps = 28/114 (24%)
Query: 164 LPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH 223
LP PP P P P S + PP + S PL P P
Sbjct: 1727 LPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPP----------SIPL--PLPP-- 1772
Query: 224 NWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPS 277
P PLS ST G PP PP+ PF T PLP PP I PP PS
Sbjct: 1773 --PTFFPLSVSTSG-----------PPTPPLLPPFPT-PLPPPPPSIPCPPPPS 1812
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 239 PSCSTVHCFIPPRPPIFNPF-LTMPLPFAPPPIFGP 273
P+ S C +PP PPI P P P APPP P
Sbjct: 1718 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISP 1753
>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
Length = 1915
Score = 37.0 bits (84), Expect = 0.021
Identities = 39/114 (34%), Positives = 42/114 (36%), Gaps = 28/114 (24%)
Query: 164 LPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH 223
LP PP P P P S + PP + S PL P P
Sbjct: 1707 LPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPP----------SIPL--PLPP-- 1752
Query: 224 NWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPS 277
P PLS ST G PP PP+ PF T PLP PP I PP PS
Sbjct: 1753 --PTFFPLSVSTSG-----------PPTPPLLPPFPT-PLPPPPPSIPCPPPPS 1792
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 239 PSCSTVHCFIPPRPPIFNPF-LTMPLPFAPPPIFGP 273
P+ S C +PP PPI P P P APPP P
Sbjct: 1698 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISP 1733
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
Length = 1952
Score = 37.0 bits (84), Expect = 0.021
Identities = 39/114 (34%), Positives = 42/114 (36%), Gaps = 28/114 (24%)
Query: 164 LPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH 223
LP PP P P P S + PP + S PL P P
Sbjct: 1744 LPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPP----------SIPL--PLPP-- 1789
Query: 224 NWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPS 277
P PLS ST G PP PP+ PF T PLP PP I PP PS
Sbjct: 1790 --PTFFPLSVSTSG-----------PPTPPLLPPFPT-PLPPPPPSIPCPPPPS 1829
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 239 PSCSTVHCFIPPRPPIFNPF-LTMPLPFAPPPIFGP 273
P+ S C +PP PPI P P P APPP P
Sbjct: 1735 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISP 1770
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
Length = 1886
Score = 37.0 bits (84), Expect = 0.021
Identities = 39/114 (34%), Positives = 42/114 (36%), Gaps = 28/114 (24%)
Query: 164 LPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH 223
LP PP P P P S + PP + S PL P P
Sbjct: 1678 LPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPP----------SIPL--PLPP-- 1723
Query: 224 NWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPS 277
P PLS ST G PP PP+ PF T PLP PP I PP PS
Sbjct: 1724 --PTFFPLSVSTSG-----------PPTPPLLPPFPT-PLPPPPPSIPCPPPPS 1763
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 239 PSCSTVHCFIPPRPPIFNPF-LTMPLPFAPPPIFGP 273
P+ S C +PP PPI P P P APPP P
Sbjct: 1669 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISP 1704
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
Length = 1957
Score = 37.0 bits (84), Expect = 0.021
Identities = 39/114 (34%), Positives = 42/114 (36%), Gaps = 28/114 (24%)
Query: 164 LPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH 223
LP PP P P P S + PP + S PL P P
Sbjct: 1749 LPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPP----------SIPL--PLPP-- 1794
Query: 224 NWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPS 277
P PLS ST G PP PP+ PF T PLP PP I PP PS
Sbjct: 1795 --PTFFPLSVSTSG-----------PPTPPLLPPFPT-PLPPPPPSIPCPPPPS 1834
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 239 PSCSTVHCFIPPRPPIFNPF-LTMPLPFAPPPIFGP 273
P+ S C +PP PPI P P P APPP P
Sbjct: 1740 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISP 1775
>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
Length = 1962
Score = 37.0 bits (84), Expect = 0.021
Identities = 39/114 (34%), Positives = 42/114 (36%), Gaps = 28/114 (24%)
Query: 164 LPQGKGFFPPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH 223
LP PP P P P S + PP + S PL P P
Sbjct: 1754 LPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPP----------SIPL--PLPP-- 1799
Query: 224 NWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPS 277
P PLS ST G PP PP+ PF T PLP PP I PP PS
Sbjct: 1800 --PTFFPLSVSTSG-----------PPTPPLLPPFPT-PLPPPPPSIPCPPPPS 1839
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 239 PSCSTVHCFIPPRPPIFNPF-LTMPLPFAPPPIFGP 273
P+ S C +PP PPI P P P APPP P
Sbjct: 1745 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISP 1780
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 37.0 bits (84), Expect = 0.021
Identities = 60/230 (26%), Positives = 84/230 (36%), Gaps = 20/230 (8%)
Query: 73 PSERTGSCIPLHSLRAHRHPYGPPPAVAEESLATAEVNSSDALAGWRQEGQDAINVSWEV 132
P+ T + L +A + P P P A AT S LA + I +
Sbjct: 629 PAVSTPLPLGLQQPQAQQPPQAPTPQAAAPPQATTP-QPSPGLAS----SPEKIVLGQPP 683
Query: 133 SGGPPALIVGGTKVNNGGTERGSNNARL---HVALPQGKGFFPPRGPQVRGPSHIPTLRS 189
S P A++ + ER H+++P P Q P+ +
Sbjct: 684 SATPTAILTQDSLQMFLPQERSQQPLSAEGPHLSVPASVIVSAPPPAQDPAPATPVAKGA 743
Query: 190 GIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMH-NWPRPIPLSSSTPGLPSCSTVHCFI 248
G+ + P A ++ + PL+GP + P PL S P LPS H
Sbjct: 744 GLGPQAPDSQASPAPAPQIPAAA-PLKGPGPSSSPSLPHQAPLGDS-PHLPS---PHPTR 798
Query: 249 PP-RPP-----IFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAPAS 292
PP RPP + P PL PPP P LP F + G+P PAS
Sbjct: 799 PPSRPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPAS 848
Score = 30.8 bits (68), Expect = 1.5
Identities = 39/119 (32%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 165 PQGKGFFPPRGPQVRGPSHIPTLRS----GIVMEVP-PGNTRIACR--GKLAHVSFPLRG 217
PQ P +GP GPS P+L G +P P TR R + VS P
Sbjct: 760 PQIPAAAPLKGP---GPSSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSVSRPPSE 816
Query: 218 PCHPMHNWPRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPP--PIFGPP 274
P P+H P P + P LP + + PP NP T P P PP P PP
Sbjct: 817 P--PLH----PCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPP 869
Score = 28.5 bits (62), Expect = 7.5
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 172 PPRGPQVRGPSHIPTLRSGIVMEVPPGNTRI-ACRGKLAHVSFPLRGPCHPMHNWPRPIP 230
PP GP P P+ S V ++R+ A + FP P H P P P
Sbjct: 868 PPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFP---PSQGPHKSPTPPP 924
Query: 231 LSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPP 269
P P+ PP PP +T P P P P
Sbjct: 925 TLHLVPE-PAAP------PPPPPRTFQMVTTPFPALPQP 956
>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
sapiens]
Length = 564
Score = 37.0 bits (84), Expect = 0.021
Identities = 65/220 (29%), Positives = 83/220 (37%), Gaps = 49/220 (22%)
Query: 96 PPAVAEESLATAEVNSSDALAGWRQEGQDAINVSWEVSGGPPALIVGGTKVNNGGTERGS 155
PP AEES E D L + DA GG + V + G TE G+
Sbjct: 355 PPPPAEES----EEEDDDGLPKKKWPTVDASYYGGRGVGGIKRMEVRWGE--KGSTEEGA 408
Query: 156 N-----NARLHVALPQGKGFFP-PRG--PQVRGPS-----HIPT----------LRSGI- 191
NAR V +P+ + FP PR +R PS + P LR G
Sbjct: 409 KLEKAKNAR--VKMPEQEYEFPEPRNLNNNMRRPSSPRKWYSPIKGKLDALWVLLRKGYD 466
Query: 192 ---VMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTPGLPSCSTVHCFI 248
VM PG+T + P + P + ++ P P TP P+ HC
Sbjct: 467 RVSVMRPQPGDTGRCINFTRVKNNQPAKYPLNNAYHTSSPPPAPIYTPPPPA---PHCPP 523
Query: 249 PP----RPPIFNPFLTMPLP-------FAPPPIFGPPLPS 277
PP PPI +P T+P P APPP PP PS
Sbjct: 524 PPPSAPTPPIPSPPSTLPPPPQAPPPNRAPPPSRPPPRPS 563
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 37.0 bits (84), Expect = 0.021
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Query: 186 TLRSGIVMEVPPGNTRIACRGKLAHVSFPLRGPCHPMHNWPRPIPLSSSTPGLPSCSTVH 245
+L+S + E P G AH+ P +P + P P+P ++ P+
Sbjct: 446 SLQSMMKTEGPSYGALPPAYGPPAHL--PYHPHVYPPNPPPPPVPPPPASFPPPAIPPPT 503
Query: 246 CFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSGGMPAPASP 293
PP PP +NP P P PP PP P P PA P
Sbjct: 504 PGYPPPPPTYNPNFPPPPPRLPPTHAVPPHPPPGLGLPPASYPPPAVP 551
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 36.6 bits (83), Expect = 0.027
Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 172 PPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPL--RGPCHPMHNWPRPI 229
PP GP P I PPG + + A PL P P P P
Sbjct: 142 PPPGPAPGPPQDISE---------PPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPP 192
Query: 230 PLSSSTP----GLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSG 285
L + +P PS T FIPP PP+ FL APPP PP+P +
Sbjct: 193 VLEALSPPHTLSSPSIPTPPDFIPPAPPL--AFL------APPP---PPVP-------AP 234
Query: 286 GMPAPASPN 294
PAPASP+
Sbjct: 235 APPAPASPH 243
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 249 PPRPPIFNPFLTMPLPFAPPPIFGPPLP--SYFAHFHSGGMPAPAS 292
PP PP+ P +P P P P PPLP AH +G P S
Sbjct: 391 PPAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKS 436
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 36.6 bits (83), Expect = 0.027
Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 172 PPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPL--RGPCHPMHNWPRPI 229
PP GP P I PPG + + A PL P P P P
Sbjct: 142 PPPGPAPGPPQDISE---------PPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPP 192
Query: 230 PLSSSTP----GLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSG 285
L + +P PS T FIPP PP+ FL APPP PP+P +
Sbjct: 193 VLEALSPPHTLSSPSIPTPPDFIPPAPPL--AFL------APPP---PPVP-------AP 234
Query: 286 GMPAPASPN 294
PAPASP+
Sbjct: 235 APPAPASPH 243
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 249 PPRPPIFNPFLTMPLPFAPPPIFGPPLP--SYFAHFHSGGMPAPAS 292
PP PP+ P +P P P P PPLP AH +G P S
Sbjct: 391 PPAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKS 436
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 36.6 bits (83), Expect = 0.027
Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 172 PPRGPQVRGPSHIPTLRSGIVMEVPPGNTRIACRGKLAHVSFPL--RGPCHPMHNWPRPI 229
PP GP P I PPG + + A PL P P P P
Sbjct: 142 PPPGPAPGPPQDISE---------PPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPP 192
Query: 230 PLSSSTP----GLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSYFAHFHSG 285
L + +P PS T FIPP PP+ FL APPP PP+P +
Sbjct: 193 VLEALSPPHTLSSPSIPTPPDFIPPAPPL--AFL------APPP---PPVP-------AP 234
Query: 286 GMPAPASPN 294
PAPASP+
Sbjct: 235 APPAPASPH 243
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 249 PPRPPIFNPFLTMPLPFAPPPIFGPPLP--SYFAHFHSGGMPAPAS 292
PP PP+ P +P P P P PPLP AH +G P S
Sbjct: 391 PPAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKS 436
>gi|18677735 proline-rich coiled-coil 1 [Homo sapiens]
Length = 445
Score = 36.2 bits (82), Expect = 0.036
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 16/75 (21%)
Query: 228 PIPLSSSTP-GLPSCSTVHCFIP-----PRPPIFNPFLTMPLPFAPPPIFG--PPLPSYF 279
P+PL++++ P+ S++ F P P+PP+ + PLPF PPP PPL +
Sbjct: 31 PVPLAATSSFSSPNVSSMESFPPLAYSTPQPPLPPVRPSAPLPFVPPPAVPSVPPLVT-- 88
Query: 280 AHFHSGGMPAPASPN 294
MP P SP+
Sbjct: 89 ------SMPPPVSPS 97
Score = 28.9 bits (63), Expect = 5.7
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 226 PRPIPLSSSTPGLPSCSTVHCFIPPRPPIFNPFLTMPLPFAPPPIFGPPLPSY 278
P PL +S P S ST F P F P + P P P GPP+ +
Sbjct: 81 PSVPPLVTSMPPPVSPSTAAAFGNPPVSHFPPSTSAPNTLLPAPPSGPPISGF 133
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,206,381
Number of Sequences: 37866
Number of extensions: 1109302
Number of successful extensions: 4802
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 4042
Number of HSP's gapped (non-prelim): 789
length of query: 298
length of database: 18,247,518
effective HSP length: 102
effective length of query: 196
effective length of database: 14,385,186
effective search space: 2819496456
effective search space used: 2819496456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.