Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRRC1 Sequence: fasta or formatted (445aa) NCBI GI: 18677735
Description:

proline-rich coiled-coil 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         42           3
 C cysteine            0.2          1           1
 D aspartate           2.9         13           1
 E glutamate           4.9         22           2
 F phenylalanine       3.6         16           1
 G glycine             7.9         35           2
 H histidine           1.6          7           1
 I isoleucine          4.3         19           1
 K lysine              2.7         12           1
 L leucine             7.2         32           2
 M methionine          2.9         13           2
 N asparagine          2.2         10           1
 P proline            13.3         59           3
 Q glutamine           4.3         19           2
 R arginine            3.6         16           2
 S serine              9.9         44           2
 T threonine           8.3         37           2
 V valine              8.3         37           3
 W tryptophan          0.9          4           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline-rich coiled-coil 1 
YLPM1                 0.060   YLP motif containing 1 
MUC2                  0.054   mucin 2 precursor 
FLJ22184              0.050   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.050   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.046   PREDICTED: hypothetical protein LOC80164 
WASF2                 0.045   WAS protein family, member 2 
WIPF3                 0.045   WAS/WASL interacting protein family, member 3 [Homo...
PRR12                 0.044   proline rich 12 
FMN1                  0.042   formin 1 
RAPH1                 0.042   Ras association and pleckstrin homology domains 1 is...
MUC7                  0.042   mucin 7, secreted precursor 
MUC7                  0.042   mucin 7, secreted precursor 
MUC7                  0.042   mucin 7, secreted precursor 
ZNF207                0.040   zinc finger protein 207 isoform a 
BRD4                  0.040   bromodomain-containing protein 4 isoform long 
SFRS15                0.040   splicing factor, arginine/serine-rich 15 isoform 3 ...
WASF1                 0.039   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.039   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.039   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.039   Wiskott-Aldrich syndrome protein family member 1 [Hom...
INF2                  0.039   inverted formin 2 isoform 2 
INF2                  0.039   inverted formin 2 isoform 1 
MUC6                  0.039   mucin 6, gastric 
RBM12                 0.038   RNA binding motif protein 12 
RBM12                 0.038   RNA binding motif protein 12 
NACA                  0.038   nascent polypeptide-associated complex alpha subuni...
WASF3                 0.037   WAS protein family, member 3 
SHANK1                0.037   SH3 and multiple ankyrin repeat domains 1 
CCNK                  0.037   cyclin K isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press