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Search of human proteins with 169636435
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169636435 caudal type homeobox 2 [Homo sapiens]
(313 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169636435 caudal type homeobox 2 [Homo sapiens] 655 0.0
gi|121114296 caudal type homeobox 1 [Homo sapiens] 215 4e-56
gi|4885127 caudal type homeobox 4 [Homo sapiens] 158 5e-39
gi|148613882 homeobox A4 [Homo sapiens] 100 1e-21
gi|24497526 homeobox B1 [Homo sapiens] 97 1e-20
gi|24497513 homeobox A3 isoform a [Homo sapiens] 97 2e-20
gi|13562112 homeobox A3 isoform a [Homo sapiens] 97 2e-20
gi|24497538 homeobox C4 [Homo sapiens] 96 4e-20
gi|24497540 homeobox C4 [Homo sapiens] 96 4e-20
gi|4504469 homeobox B5 [Homo sapiens] 94 2e-19
gi|19923391 homeobox D3 [Homo sapiens] 94 2e-19
gi|85068580 homeobox B7 [Homo sapiens] 92 6e-19
gi|23397672 homeobox D4 [Homo sapiens] 90 3e-18
gi|23097236 homeobox A9 [Homo sapiens] 89 7e-18
gi|23503237 homeobox B6 [Homo sapiens] 87 1e-17
gi|5031761 homeobox A1 isoform a [Homo sapiens] 87 2e-17
gi|13273315 homeobox B4 [Homo sapiens] 86 4e-17
gi|157426823 NK2 homeobox 4 [Homo sapiens] 86 6e-17
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 85 7e-17
gi|24497517 homeobox A5 [Homo sapiens] 84 2e-16
gi|18959212 GS homeobox 2 [Homo sapiens] 83 3e-16
gi|194363768 homeobox D9 [Homo sapiens] 82 6e-16
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 82 6e-16
gi|11321638 homeobox C5 [Homo sapiens] 82 6e-16
gi|24497547 homeobox C9 [Homo sapiens] 82 8e-16
gi|24497515 homeobox A3 isoform b [Homo sapiens] 81 1e-15
gi|13489077 homeobox A6 [Homo sapiens] 81 1e-15
gi|15029506 homeobox D8 [Homo sapiens] 81 1e-15
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 81 1e-15
gi|89257348 homeo box HB9 [Homo sapiens] 81 1e-15
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 655 bits (1691), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS 60
MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
Sbjct: 1 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS 60
Query: 61 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH 120
PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
Sbjct: 61 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH 120
Query: 121 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ 180
HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
Sbjct: 121 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ 180
Query: 181 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK 240
VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
Sbjct: 181 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK 240
Query: 241 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVL 300
ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVL
Sbjct: 241 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVL 300
Query: 301 GPTGGVLNPTVTQ 313
GPTGGVLNPTVTQ
Sbjct: 301 GPTGGVLNPTVTQ 313
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 215 bits (548), Expect = 4e-56
Identities = 133/269 (49%), Positives = 158/269 (58%), Gaps = 51/269 (18%)
Query: 1 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN 54
MYV Y+LDKD +YP R + L L PQ + +PPQYPD+ Y ++
Sbjct: 1 MYVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSY---------SH 50
Query: 55 LDSAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY 113
++ A +P +W A + AP ++DW Y PG AA AA+ A++ + P D+
Sbjct: 51 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAASP-----------ASLAFGPPPDF 98
Query: 114 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP- 172
P P P GLL GP P+ SPG QR EWMR+
Sbjct: 99 SPVPAP----------PGPGPGLLAQPLGGPGTPS--------SPGAQRPTPYEWMRRSV 140
Query: 173 AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI 232
A G KTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRK+ELAA LGL+ERQVKI
Sbjct: 141 AAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKI 200
Query: 233 WFQNRRAKERKINKKKLQQQQQQQPPQPP 261
WFQNRRAKERK+NKKK QQQQQPPQPP
Sbjct: 201 WFQNRRAKERKVNKKK---QQQQQPPQPP 226
>gi|4885127 caudal type homeobox 4 [Homo sapiens]
Length = 284
Score = 158 bits (400), Expect = 5e-39
Identities = 113/275 (41%), Positives = 139/275 (50%), Gaps = 61/275 (22%)
Query: 1 MYVSYLLDKDVSMYPSSVRHSGGLNLA-------------PQNFVSPPQYPDYGGYHVAA 47
MY S LL+K+ MYP ++ GG A NF + P + Y GY
Sbjct: 1 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGY---- 56
Query: 48 AAAAAANLDSAQSPGPSWPA--AYGAPL---REDWNGYAPGGAAAAANAVAHGLNGGSPA 102
S P WP+ +G+P REDW+ Y PG ++ + + SPA
Sbjct: 57 --------PHMPSMDPHWPSLGVWGSPYSPPREDWSVY-PGPSSTMGTVPVNDVTS-SPA 106
Query: 103 A--AMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPG----PAATAAAEQL 156
A + YS+ P + S L PG G P AA+
Sbjct: 107 AFCSTDYSNLG--------------PVGGGTSGSSL-----PGQAGGSLVPTDAGAAKAS 147
Query: 157 SPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRK 216
SP R + WMRK Q + KTRTK+KYRVVYTDHQRLELEKEFH +RYITI+RK
Sbjct: 148 SPSRSRHSPYAWMRKTVQVT----GKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRK 203
Query: 217 AELAATLGLSERQVKIWFQNRRAKERKINKKKLQQ 251
+ELA LGLSERQVKIWFQNRRAKERK+ KKK+ Q
Sbjct: 204 SELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQ 238
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 100 bits (250), Expect = 1e-21
Identities = 87/282 (30%), Positives = 114/282 (40%), Gaps = 28/282 (9%)
Query: 20 HSGGLNLAPQNFVSP-----PQYPDYGGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLR 74
H+GG ++ +P P YP Y AA D+A G A+ G P +
Sbjct: 62 HAGGGREPTASYYAPRTAREPAYPAAALYPAHGAA------DTAYPYGYRGGASPGRPPQ 115
Query: 75 EDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCAS 134
P A A AHGL+ + P P P P AAP+
Sbjct: 116 -------PEQPPAQAKGPAHGLHASH---VLQPQLPPPLQPRAVPPAAPRRCEAAPATPG 165
Query: 135 GLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYT 194
+ P P A L G+ + WM+K ++ + R YT
Sbjct: 166 --VPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYT 223
Query: 195 DHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQ 254
Q LELEKEFH++RY+T RR+ E+A TL LSERQVKIWFQNRR K +K +K + +
Sbjct: 224 RQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRS 283
Query: 255 QQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSV 296
PP Q Q L P P S VP S+
Sbjct: 284 SNSASASAGPPGKAQTQSPHLHPHPHP-----STSTPVPSSI 320
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 97.4 bits (241), Expect = 1e-20
Identities = 81/260 (31%), Positives = 116/260 (44%), Gaps = 24/260 (9%)
Query: 11 VSMYPSSVRHSGGLNLAP--QNFVSPPQYPD--YGGYHVAAAAAAAANLDSAQSPGPSWP 66
V Y S R+ GGL+ QN P Q P G ++A + A + S GPS
Sbjct: 39 VDSYASEGRYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQY 98
Query: 67 AAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHP 126
G D + P A ++ G G + P Y P H P+ +
Sbjct: 99 YPLGQS-EGDGGYFHPSSYGAQLGGLSDGYGAGG-------AGPGPYPPQHPPYGNEQTA 150
Query: 127 AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTK 186
+ AP+ A L + P T A +RN + K ++ LGS RT
Sbjct: 151 SFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPK-TAKVSEPGLGSPSGLRTN 209
Query: 187 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK 246
+T Q ELEKEFH+++Y++ R+ E+AATL L+E QVKIWFQNRR K+
Sbjct: 210 ------FTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQ----- 258
Query: 247 KKLQQQQQQQPPQPPPPPPQ 266
KK ++++ + PP PP P +
Sbjct: 259 KKREREEGRVPPAPPGCPKE 278
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 96.7 bits (239), Expect = 2e-20
Identities = 96/316 (30%), Positives = 121/316 (38%), Gaps = 59/316 (18%)
Query: 40 YGGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGG 99
YGGY AA A N + P + A G R + +P ++A + AH L
Sbjct: 13 YGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSP--SSAGGHPKAHEL--- 67
Query: 100 SPAAAMGYSSPADYHPH-HHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSP 158
S A S+P P P HP P AAP P P PAA SP
Sbjct: 68 SEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASP 127
Query: 159 GGQRRN---------------------LCEWMRKPAQQ-----SLGSQVKTRTKDKY--- 189
N + WM++ Q S S ++ DK
Sbjct: 128 PQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPG 187
Query: 190 -------RVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKER 242
R YT Q +ELEKEFH++RY+ R+ E+A L L+ERQ+KIWFQNRR K +
Sbjct: 188 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 247
Query: 243 KINKKK--LQQQQQQQPPQPPPPP--------------PQPPQPQPGPLRSVPEPLSPVS 286
K K K L Q P + P PP P +PQ P S P P
Sbjct: 248 KDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP-PQGTYG 306
Query: 287 SLQASVPGSVPGVLGP 302
AS P S+P P
Sbjct: 307 LPPASYPASLPSCAPP 322
Score = 38.5 bits (88), Expect = 0.008
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 255 QQPPQPPPP---PPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGVLNP 309
+ P PPPP PP P PQP P P P +P AS P + P +P
Sbjct: 87 EPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSP 144
Score = 36.2 bits (82), Expect = 0.039
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 257 PPQPPPPPPQPPQ---PQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGVLNPTVTQ 313
PPQ PP PQPPQ P P + P P S S Q + P + + +PTV +
Sbjct: 94 PPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAK 153
Score = 31.6 bits (70), Expect = 0.95
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 256 QPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPT 303
QPPQP P PP P P P S P + ++ + P + PT
Sbjct: 103 QPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 150
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 96.7 bits (239), Expect = 2e-20
Identities = 96/316 (30%), Positives = 121/316 (38%), Gaps = 59/316 (18%)
Query: 40 YGGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGG 99
YGGY AA A N + P + A G R + +P ++A + AH L
Sbjct: 13 YGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSP--SSAGGHPKAHEL--- 67
Query: 100 SPAAAMGYSSPADYHPH-HHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSP 158
S A S+P P P HP P AAP P P PAA SP
Sbjct: 68 SEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASP 127
Query: 159 GGQRRN---------------------LCEWMRKPAQQ-----SLGSQVKTRTKDKY--- 189
N + WM++ Q S S ++ DK
Sbjct: 128 PQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPG 187
Query: 190 -------RVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKER 242
R YT Q +ELEKEFH++RY+ R+ E+A L L+ERQ+KIWFQNRR K +
Sbjct: 188 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 247
Query: 243 KINKKK--LQQQQQQQPPQPPPPP--------------PQPPQPQPGPLRSVPEPLSPVS 286
K K K L Q P + P PP P +PQ P S P P
Sbjct: 248 KDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP-PQGTYG 306
Query: 287 SLQASVPGSVPGVLGP 302
AS P S+P P
Sbjct: 307 LPPASYPASLPSCAPP 322
Score = 38.5 bits (88), Expect = 0.008
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 255 QQPPQPPPP---PPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGVLNP 309
+ P PPPP PP P PQP P P P +P AS P + P +P
Sbjct: 87 EPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSP 144
Score = 36.2 bits (82), Expect = 0.039
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 257 PPQPPPPPPQPPQ---PQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGVLNPTVTQ 313
PPQ PP PQPPQ P P + P P S S Q + P + + +PTV +
Sbjct: 94 PPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAK 153
Score = 31.6 bits (70), Expect = 0.95
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 256 QPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPT 303
QPPQP P PP P P P S P + ++ + P + PT
Sbjct: 103 QPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 150
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 95.9 bits (237), Expect = 4e-20
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 4/193 (2%)
Query: 100 SPAAAMGYSSPADYHPHHHPHHHPHHPAAA--PSCASGLLQTLNPGPPGPAATAAAEQLS 157
S + G + + P HHHP + P+ SG + +P PP + A S
Sbjct: 68 SCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSS 127
Query: 158 PGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKA 217
++ + WM+K ++ + R YT Q LELEKEFHY+RY+T RR+
Sbjct: 128 AASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRI 187
Query: 218 ELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRS 277
E+A +L LSERQ+KIWFQNRR K +K +L + + P P PG
Sbjct: 188 EIAHSLCLSERQIKIWFQNRRMKWKK--DHRLPNTKVRSAPPAGAAPSTLSAATPGTSED 245
Query: 278 VPEPLSPVSSLQA 290
+ +P +A
Sbjct: 246 HSQSATPPEQQRA 258
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 95.9 bits (237), Expect = 4e-20
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 4/193 (2%)
Query: 100 SPAAAMGYSSPADYHPHHHPHHHPHHPAAA--PSCASGLLQTLNPGPPGPAATAAAEQLS 157
S + G + + P HHHP + P+ SG + +P PP + A S
Sbjct: 68 SCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSS 127
Query: 158 PGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKA 217
++ + WM+K ++ + R YT Q LELEKEFHY+RY+T RR+
Sbjct: 128 AASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRI 187
Query: 218 ELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRS 277
E+A +L LSERQ+KIWFQNRR K +K +L + + P P PG
Sbjct: 188 EIAHSLCLSERQIKIWFQNRRMKWKK--DHRLPNTKVRSAPPAGAAPSTLSAATPGTSED 245
Query: 278 VPEPLSPVSSLQA 290
+ +P +A
Sbjct: 246 HSQSATPPEQQRA 258
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 94.0 bits (232), Expect = 2e-19
Identities = 77/242 (31%), Positives = 112/242 (46%), Gaps = 37/242 (15%)
Query: 7 LDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQSPGPSWP 66
+D V+ +S H G + + + F +P Q P + AA++ +L S +S P
Sbjct: 52 MDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRF------RQAASSCSLSSPES----LP 101
Query: 67 AAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHP 126
G D +G P ++ + A + SS A++
Sbjct: 102 CTNG-----DSHGAKPSASSPSDQATSA-------------SSSANFTEIDEASASSEPE 143
Query: 127 AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTK 186
AA +S +L P P AT+ A +P GQ + WMRK + +
Sbjct: 144 EAASQLSS---PSLARAQPEPMATSTA---APEGQTPQIFPWMRK---LHISHDMTGPDG 194
Query: 187 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK 246
+ R YT +Q LELEKEFH++RY+T RR+ E+A L LSERQ+KIWFQNRR K +K NK
Sbjct: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
Query: 247 KK 248
K
Sbjct: 255 LK 256
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 93.6 bits (231), Expect = 2e-19
Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 24/228 (10%)
Query: 50 AAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSS 109
AAA++LD+ PG + APLR + A + + GG + G +S
Sbjct: 54 AAASSLDT-DYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNS 112
Query: 110 PADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWM 169
+ P P P P ++P+ G + P GP A++++ +S + + WM
Sbjct: 113 --EQQPPQPPPPPPTLPPSSPTNPGGGVPAKKP-KGGPNASSSSATIS-----KQIFPWM 164
Query: 170 RKPAQQS--------LGSQVKTRT-----KDKYRVVYTDHQRLELEKEFHYSRYITIRRK 216
++ Q S G + ++ + R YT Q +ELEKEFH++RY+ R+
Sbjct: 165 KESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRR 224
Query: 217 AELAATLGLSERQVKIWFQNRRAKERKINKKK--LQQQQQQQPPQPPP 262
E+A L L+ERQ+KIWFQNRR K +K K K L Q P + PP
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPP 272
Score = 36.6 bits (83), Expect = 0.030
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 254 QQQPPQPPPPPPQ-PPQPQPGPLRSVP 279
+QQPPQPPPPPP PP P VP
Sbjct: 113 EQQPPQPPPPPPTLPPSSPTNPGGGVP 139
Score = 31.2 bits (69), Expect = 1.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 251 QQQQQQPPQPPP--PPPQPPQPQPGPLRSVPEPLSPVSSLQASV 292
+QQ QPP PPP PP P P G P+ SS A++
Sbjct: 113 EQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATI 156
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 92.0 bits (227), Expect = 6e-19
Identities = 74/214 (34%), Positives = 96/214 (44%), Gaps = 32/214 (14%)
Query: 36 QYPDYGGYHVAAAAAAAANLDSAQSPG-PSWPAAYGAPLREDWNGYAPGGAAAAANAVAH 94
+YP A + A +P P + A GA G PGG A + A
Sbjct: 13 KYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAA- 71
Query: 95 GLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAE 154
G AA G P+ ++ H P L + PG AA A +
Sbjct: 72 ----GVYAAGYGLE-PSSFNMHCAPFEQN-------------LSGVCPGDSAKAAGAKEQ 113
Query: 155 QLSPGGQRRN--LCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT 212
+ S N + WMR S G+ K + R YT +Q LELEKEFHY+RY+T
Sbjct: 114 RDSDLAAESNFRIYPWMR-----SSGTDRK-----RGRQTYTRYQTLELEKEFHYNRYLT 163
Query: 213 IRRKAELAATLGLSERQVKIWFQNRRAKERKINK 246
RR+ E+A TL L+ERQ+KIWFQNRR K +K NK
Sbjct: 164 RRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 89.7 bits (221), Expect = 3e-18
Identities = 63/172 (36%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 75 EDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCAS 134
+ + G PG +A A HG G P Y++P + P P P AP +
Sbjct: 60 QPFGGSGPGPGSALP-ARGHGQEPGGPGGH--YAAPGE------PCPAPPAPPPAPLPGA 110
Query: 135 GLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYT 194
+P P P+ TA Q + WM+K S+ + R YT
Sbjct: 111 RAYSQSDPKQP-PSGTALK-------QPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYT 162
Query: 195 DHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK 246
Q LELEKEFH++RY+T RR+ E+A TL LSERQ+KIWFQNRR K +K +K
Sbjct: 163 RQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK 214
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 88.6 bits (218), Expect = 7e-18
Identities = 73/266 (27%), Positives = 106/266 (39%), Gaps = 55/266 (20%)
Query: 41 GGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLRE-----DWNGYAPGGAAAAANAVAHG 95
G Y+V + A D S G P G P R+ + ++P + A
Sbjct: 8 GNYYVDSFLLGADAADEL-SVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKATVFGAS 66
Query: 96 LNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQ 155
N A A + +H HHHP+ HP P AA + +++ PG + A
Sbjct: 67 WNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPS 126
Query: 156 LSPGG-------QRRNLCEWM--------------------RKPAQQSLGSQ-------- 180
P G RR C + ++P++ +
Sbjct: 127 SRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGG 186
Query: 181 --------------VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLS 226
+ R+ K R YT HQ LELEKEF ++ Y+T R+ E+A L L+
Sbjct: 187 DKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLT 246
Query: 227 ERQVKIWFQNRRAKERKINKKKLQQQ 252
ERQVKIWFQNRR K +KINK + + +
Sbjct: 247 ERQVKIWFQNRRMKMKKINKDRAKDE 272
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 87.4 bits (215), Expect = 1e-17
Identities = 67/192 (34%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 63 PSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGY--SSPADYHPHHHPH 120
P + + Y PLR Y PG A + P A GY ++P DY P P
Sbjct: 26 PLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYY----PPAGGGYGRAAPCDYGPA--PA 79
Query: 121 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRN------LCEWMRKPAQ 174
+ +A CA P P P + A+ S G+ + WM++
Sbjct: 80 FYREKESA---CALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQR--M 134
Query: 175 QSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWF 234
S S + + R YT +Q LELEKEFHY+RY+T RR+ E+A L L+ERQ+KIWF
Sbjct: 135 NSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWF 194
Query: 235 QNRRAKERKINK 246
QNRR K +K +K
Sbjct: 195 QNRRMKWKKESK 206
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 87.0 bits (214), Expect = 2e-17
Identities = 76/249 (30%), Positives = 109/249 (43%), Gaps = 39/249 (15%)
Query: 57 SAQSPGPSWPAA-YGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMG-YSSPADYH 114
S S GPS+ + + AP Y+P A+ V+ G +PA G SSP H
Sbjct: 91 SHSSCGPSYGSQNFSAP-------YSPYALNQEAD-VSGGYPQCAPAVYSGNLSSPMVQH 142
Query: 115 PHHHPH------------HHPH---HPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPG 159
HHH HH + H + A + + L L+ + A+E SP
Sbjct: 143 HHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPA 202
Query: 160 GQRRNLCEWMR----KPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRR 215
+WM+ P +G + R +T Q ELEKEFH+++Y+T R
Sbjct: 203 ----QTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRAR 258
Query: 216 KAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPL 275
+ E+AA+L L+E QVKIWFQNRR K++K K+ L P P PP + +
Sbjct: 259 RVEIAASLQLNETQVKIWFQNRRMKQKKREKEGL------LPISPATPPGNDEKAEESSE 312
Query: 276 RSVPEPLSP 284
+S P P
Sbjct: 313 KSSSSPCVP 321
Score = 35.8 bits (81), Expect = 0.050
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 115 PHHHPHHHPHHPAAAPSCASGLL 137
PHHH HHH HHP A SG L
Sbjct: 64 PHHHHHHHHHHPQPATYQTSGNL 86
Score = 28.9 bits (63), Expect = 6.2
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 11/32 (34%)
Query: 92 VAHGLNGGSPAAAMGYSSPADYHPHHHPHHHP 123
V G+ GSP +H HHH HHHP
Sbjct: 55 VGRGVQIGSP-----------HHHHHHHHHHP 75
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 85.9 bits (211), Expect = 4e-17
Identities = 50/117 (42%), Positives = 64/117 (54%), Gaps = 14/117 (11%)
Query: 130 PSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKY 189
P CA NP P P+ +A E + + WMRK ++ +
Sbjct: 120 PPCAQ------NPLHPSPSHSACKEPV--------VYPWMRKVHVSTVNPNYAGGEPKRS 165
Query: 190 RVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK 246
R YT Q LELEKEFHY+RY+T RR+ E+A L LSERQ+KIWFQNRR K +K +K
Sbjct: 166 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHK 222
Score = 38.5 bits (88), Expect = 0.008
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 249 LQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPG 294
+Q+ + P PPPPPP PP P P P S P P + PG
Sbjct: 62 VQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPG 107
Score = 32.7 bits (73), Expect = 0.43
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 257 PPQPPPPPP----QPPQPQPGPLRS-VPEPLSPVSSLQASVP 293
PP PPPPPP P P P P + +PEP ++ +S P
Sbjct: 77 PPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPP 118
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 85.5 bits (210), Expect = 6e-17
Identities = 92/305 (30%), Positives = 122/305 (40%), Gaps = 61/305 (20%)
Query: 48 AAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGY 107
A AA A PGPS AA A G P A A NA A + AAA
Sbjct: 40 APLGAAAAYRAPPPGPSSQAATVA-------GMQPSHAMAGHNAAA-----AAAAAAAAA 87
Query: 108 SSPADYHPHHHPHHHPHHPAAAPSCASGL-----LQTLNPGPPGPAATAAAEQLSPGGQR 162
++ A YH PH A C GL L G G AAT +P +
Sbjct: 88 AAAATYHMPPGVSQFPHG-AMGSYCNGGLGNMGELPAYTDGMRGGAATGWYGA-NPDPRY 145
Query: 163 RNLCEWMRKPA----------------QQSLG----SQVKTRTKDKYRVVYTDHQRLELE 202
++ +M A +SLG + + K RV+++ Q ELE
Sbjct: 146 SSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVYELE 205
Query: 203 KEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQ----PP 258
+ F +Y++ + LA+ + L+ QVKIWFQN R K ++ K K QQ QQ+ PP
Sbjct: 206 RRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPP 265
Query: 259 QPPPPPP------------QPPQ-----PQPGPLRSVPEPLSPVSSLQASVPGSVPGVLG 301
PPPP P +P Q P PG P +P L+ P S P + G
Sbjct: 266 PPPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSP-SPPALHG 324
Query: 302 PTGGV 306
P GG+
Sbjct: 325 PGGGL 329
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 85.1 bits (209), Expect = 7e-17
Identities = 81/285 (28%), Positives = 103/285 (36%), Gaps = 45/285 (15%)
Query: 46 AAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAA------------------- 86
A A A A+ P P G D NGY+ GG
Sbjct: 505 ALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDE 564
Query: 87 ------AAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTL 140
AA GG A G P AAAP +
Sbjct: 565 DEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDE-AAAPGPREN--SPV 621
Query: 141 NPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLE 200
PGPPG AA +P G KP ++ GS K+ + R +T Q +
Sbjct: 622 APGPPGGAAAPGGAGTTPQGTAT-----AAKPKRKRTGSDSKSGKPRRARTAFTYEQLVA 676
Query: 201 LEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQP 260
LE +F +RY+++ + LA +L L+E QVKIWFQNRR K +K Q
Sbjct: 677 LENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK--------QNPGADTSA 728
Query: 261 PPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVP-GVLGPTG 304
P P P GP +P LSP+S S P P G+ GP G
Sbjct: 729 PTGGGGGPGPGAGPGTGLPGGLSPLS---PSPPMGAPLGMHGPAG 770
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 83.6 bits (205), Expect = 2e-16
Identities = 69/205 (33%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 46 AAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAM 105
AA+A+AA P S + PL + AP + + + + L+ S A+A
Sbjct: 74 AASASAAPAEPRYSQPATSTHSPQPDPL--PCSAVAPSPGSDSHHGGKNSLSNSSGASAD 131
Query: 106 GYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNL 165
S+ A A S + +P PP A Q+ P
Sbjct: 132 AGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPP------AQPQIYP------- 178
Query: 166 CEWMRKP--AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATL 223
WMRK + ++G R R YT +Q LELEKEFH++RY+T RR+ E+A L
Sbjct: 179 --WMRKLHISHDNIGGPEGKRA----RTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL 232
Query: 224 GLSERQVKIWFQNRRAKERKINKKK 248
LSERQ+KIWFQNRR K +K NK K
Sbjct: 233 CLSERQIKIWFQNRRMKWKKDNKLK 257
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 83.2 bits (204), Expect = 3e-16
Identities = 67/191 (35%), Positives = 85/191 (44%), Gaps = 30/191 (15%)
Query: 78 NGYAPGGAAAAANAVAHGLNGGSPAAAMGYSS-PADY---------HPHHHP---HHHPH 124
+G A G A + G G P +SS P D H HHHP HHH H
Sbjct: 80 SGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHHHH 139
Query: 125 HP---------AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQ 175
P AAA + A+ +P P TA ++ RR C M
Sbjct: 140 QPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVAD--PRRFHCLTMGG---- 193
Query: 176 SLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQ 235
S SQV + R +T Q LELE+EF + Y++ R+ E+A L LSE+QVKIWFQ
Sbjct: 194 SDASQVPNGKR--MRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQ 251
Query: 236 NRRAKERKINK 246
NRR K +K K
Sbjct: 252 NRRVKHKKEGK 262
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 82.0 bits (201), Expect = 6e-16
Identities = 70/209 (33%), Positives = 99/209 (47%), Gaps = 27/209 (12%)
Query: 60 SPGPSWPAA---YGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAA--AMGYSSPADYH 114
SPGPS PA YG E AP AA+ ++ + L+ S ++ S
Sbjct: 146 SPGPSGPANGRHYGIK-PETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSG 204
Query: 115 PHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAAT---------AAAEQLSPGGQRRNL 165
P + AAA + +G PG AAT A ++ PG +
Sbjct: 205 PEFSCNSFLQEKAAAATGGTG------PGAGIGAATGTGGSSEPSACSDHPIPGCSLKEE 258
Query: 166 CEWMRKPAQQSL------GSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAEL 219
+ +P QQ L + + R+ K R YT +Q LELEKEF ++ Y+T R+ E+
Sbjct: 259 EKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEV 318
Query: 220 AATLGLSERQVKIWFQNRRAKERKINKKK 248
A L L+ERQVKIWFQNRR K +K++K+K
Sbjct: 319 ARILNLTERQVKIWFQNRRMKMKKMSKEK 347
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 82.0 bits (201), Expect = 6e-16
Identities = 81/286 (28%), Positives = 103/286 (36%), Gaps = 47/286 (16%)
Query: 46 AAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAA------------------- 86
A A A A+ P P G D NGY+ GG
Sbjct: 102 ALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDE 161
Query: 87 ------AAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAA-APSCASGLLQT 139
AA GG A G P AA P S + Q
Sbjct: 162 DEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQ- 220
Query: 140 LNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRL 199
GPPG AA +P G KP ++ GS K+ + R +T Q +
Sbjct: 221 ---GPPGGAAAPGGAGTTPQGTAT-----AAKPKRKRTGSDSKSGKPRRARTAFTYEQLV 272
Query: 200 ELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQ 259
LE +F +RY+++ + LA +L L+E QVKIWFQNRR K +K Q
Sbjct: 273 ALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK--------QNPGADTS 324
Query: 260 PPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVP-GVLGPTG 304
P P P GP +P LSP+S S P P G+ GP G
Sbjct: 325 APTGGGGGPGPGAGPGTGLPGGLSPLS---PSPPMGAPLGMHGPAG 367
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 82.0 bits (201), Expect = 6e-16
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 33/161 (20%)
Query: 118 HPHHHPHHPA----AAPSCASGLLQT--LNPGPPGPAATAAA------------EQLSPG 159
+P HP PA AAP A G + LNPG A A E+ +
Sbjct: 66 NPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQT 125
Query: 160 GQRRNLCE---------WMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRY 210
GQ L + WM K ++RT YT +Q LELEKEFH++RY
Sbjct: 126 GQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTS------YTRYQTLELEKEFHFNRY 179
Query: 211 ITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQ 251
+T RR+ E+A L L+ERQ+KIWFQNRR K +K +K K ++
Sbjct: 180 LTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKE 220
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 81.6 bits (200), Expect = 8e-16
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 101 PAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGG 160
PA Y+ D +P P + P G L P + A+ L+
Sbjct: 110 PAGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSK 169
Query: 161 QRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELA 220
+ + + + + R+ K R YT +Q LELEKEF ++ Y+T R+ E+A
Sbjct: 170 HKEEKADL---DPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVA 226
Query: 221 ATLGLSERQVKIWFQNRRAKERKINKKKLQQQQ 253
L L+ERQVKIWFQNRR K +K+NK+K ++Q
Sbjct: 227 RVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQ 259
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 81.3 bits (199), Expect = 1e-15
Identities = 52/129 (40%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 190 RVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKK- 248
R YT Q +ELEKEFH++RY+ R+ E+A L L+ERQ+KIWFQNRR K +K K K
Sbjct: 37 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKG 96
Query: 249 -LQQQQQQQPPQPPPPP--------------PQPPQPQPGPLRSVPEPLSPVSSLQASVP 293
L Q P + P PP P +PQ P S P P AS P
Sbjct: 97 MLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP-PQGTYGLPPASYP 155
Query: 294 GSVPGVLGP 302
S+P P
Sbjct: 156 ASLPSCAPP 164
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 81.3 bits (199), Expect = 1e-15
Identities = 66/198 (33%), Positives = 91/198 (45%), Gaps = 36/198 (18%)
Query: 65 WPAAYGAPLREDWNGYAP-----GGAAAAANAVAH-----------GLNGGSPAAAMGYS 108
+PA+YGA D +P + A N ++ L+G SP+ +
Sbjct: 38 FPASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQR 97
Query: 109 SPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEW 168
P DY H P +SG + L+ T+ + P QR N C
Sbjct: 98 GPGDYL------HFSPEQQYKPDSSSGQGKALHDEGADRKYTSP---VYPWMQRMNSC-- 146
Query: 169 MRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSER 228
A GS + + R YT +Q LELEKEFH++RY+T RR+ E+A L L+ER
Sbjct: 147 ----AGAVYGSHGR-----RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTER 197
Query: 229 QVKIWFQNRRAKERKINK 246
Q+KIWFQNRR K +K NK
Sbjct: 198 QIKIWFQNRRMKWKKENK 215
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 80.9 bits (198), Expect = 1e-15
Identities = 78/270 (28%), Positives = 109/270 (40%), Gaps = 40/270 (14%)
Query: 4 SYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQY-----PDYGGYHVAAAAAAAANLDSA 58
SY ++ S Y ++ + A ++P Y P+ GG H AAAAA +SA
Sbjct: 3 SYFVNPLYSKYKAAAAAAAAAGEA----INPTYYDCHFAPEVGGRHAAAAAALQLYGNSA 58
Query: 59 QSPGPSWPAAYGAPLREDW-NGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHH 117
+ P A+ P +G GG H GGSPAAA + P HP
Sbjct: 59 AGFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHP-GGGSPAAAYQAAPPPPPHPPP 117
Query: 118 HP----------HHHP----------HHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLS 157
P H P P + L+Q + + L+
Sbjct: 118 PPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLN 177
Query: 158 PGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKA 217
+ WMR A + + R Y+ Q LELEKEF ++ Y+T +R+
Sbjct: 178 QSSSPSQMFPWMRPQAAPG---------RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRI 228
Query: 218 ELAATLGLSERQVKIWFQNRRAKERKINKK 247
E++ L L+ERQVKIWFQNRR K +K N K
Sbjct: 229 EVSHALALTERQVKIWFQNRRMKWKKENNK 258
Score = 33.5 bits (75), Expect = 0.25
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 254 QQQPPQPPPPPPQPPQPQPGPLRSVPEP 281
Q PP PP PPP PP P G + EP
Sbjct: 106 QAAPPPPPHPPPPPPPPPCGGIACHGEP 133
Score = 30.8 bits (68), Expect = 1.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 253 QQQQPPQPPPPPPQPPQPQPG 273
Q PP P PPPP PP P G
Sbjct: 106 QAAPPPPPHPPPPPPPPPCGG 126
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 80.9 bits (198), Expect = 1e-15
Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 142 PGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLEL 201
PGPPG AA +P G KP ++ GS K+ + R +T Q + L
Sbjct: 58 PGPPGGAAAPGGAGTTPQGTAT-----AAKPKRKRTGSDSKSGKPRRARTAFTYEQLVAL 112
Query: 202 EKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPP 261
E +F +RY+++ + LA +L L+E QVKIWFQNRR K +K Q P
Sbjct: 113 ENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK--------QNPGADTSAP 164
Query: 262 PPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVP-GVLGPTG 304
P P GP +P LSP+S S P P G+ GP G
Sbjct: 165 TGGGGGPGPGAGPGTGLPGGLSPLS---PSPPMGAPLGMHGPAG 205
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 80.9 bits (198), Expect = 1e-15
Identities = 66/203 (32%), Positives = 95/203 (46%), Gaps = 16/203 (7%)
Query: 69 YGAPLREDWNGYAPGGAAAAANAVAHGLNGG-SPAAAMGYSS-PADYHPHHHPHHHPHHP 126
+G P G A AAAAA A A GL G P A G + PA + HP + +
Sbjct: 110 HGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYG-YSA 168
Query: 127 AAAPSCASGLLQTLN---PGPPGPAATAAAEQLSPGGQRRNLCEWMRK-------PAQQS 176
AAA + +G L+ P G A+ + G L +W+R P
Sbjct: 169 AAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMILPKMPD 228
Query: 177 LGSQVKTRTKDKYR---VVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIW 233
SQ ++ K R +T Q LELE +F ++Y++ ++ E+A +L L+E QVKIW
Sbjct: 229 FNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIW 288
Query: 234 FQNRRAKERKINKKKLQQQQQQQ 256
FQNRR K ++ K K Q Q+ +
Sbjct: 289 FQNRRMKWKRSKKAKEQAAQEAE 311
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,057,877
Number of Sequences: 37866
Number of extensions: 1262042
Number of successful extensions: 37425
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 781
Number of HSP's that attempted gapping in prelim test: 14044
Number of HSP's gapped (non-prelim): 13887
length of query: 313
length of database: 18,247,518
effective HSP length: 102
effective length of query: 211
effective length of database: 14,385,186
effective search space: 3035274246
effective search space used: 3035274246
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.