Guide to the Human Genome
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Name: CDX1 Sequence: fasta or formatted (265aa) NCBI GI: 121114296
Description:

caudal type homeobox 1

Referenced in:

Homeobox and Related Proteins
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         31           3
 C cysteine            0.4          1           1
 D aspartate           3.4          9           2
 E glutamate           3.8         10           2
 F phenylalanine       2.6          7           1
 G glycine             9.8         26           5
 H histidine           1.5          4           1
 I isoleucine          1.5          4           1
 K lysine              5.3         14           3
 L leucine             6.4         17           2
 M methionine          1.5          4           1
 N asparagine          1.5          4           1
 P proline            18.5         49           3
 Q glutamine           4.9         13           5
 R arginine            5.3         14           2
 S serine              7.2         19           2
 T threonine           4.5         12           1
 V valine              4.2         11           2
 W tryptophan          1.5          4           1
 Y tyrosine            4.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caudal type homeobox 1 
CDX2                  0.353   caudal type homeobox 2 
CDX4                  0.283   caudal type homeobox 4 
HOXC4                 0.156   homeobox C4 
HOXC4                 0.156   homeobox C4 
HOXB4                 0.151   homeobox B4 
HOXD4                 0.139   homeobox D4 
HOXB2                 0.138   homeobox B2 
HOXA4                 0.136   homeobox A4 
PDX1                  0.134   pancreatic and duodenal homeobox 1 
HOXB1                 0.134   homeobox B1 
HOXA3                 0.132   homeobox A3 isoform a 
HOXA3                 0.132   homeobox A3 isoform a 
HOXD3                 0.130   homeobox D3 
HOXB6                 0.128   homeobox B6 
HOXA5                 0.125   homeobox A5 
HOXB5                 0.125   homeobox B5 
HOXC5                 0.123   homeobox C5 
HOXD8                 0.121   homeobox D8 
HOXA2                 0.121   homeobox A2 
HOXB3                 0.119   homeobox B3 
HOXA9                 0.115   homeobox A9 
HOXA6                 0.113   homeobox A6 
HOXD11                0.112   homeobox D11 
HOXD1                 0.110   homeobox D1 
HOXB7                 0.108   homeobox B7 
HOXC9                 0.106   homeobox C9 
HOXA10                0.102   homeobox A10 isoform a 
HOXC6                 0.102   homeobox C6 isoform 2 
HOXC10                0.102   homeobox C10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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