Guide to the Human Genome
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Name: HOXB5 Sequence: fasta or formatted (269aa) NCBI GI: 4504469
Description:

homeobox B5

Referenced in:

HOX Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         30           2
 C cysteine            1.1          3           1
 D aspartate           3.3          9           1
 E glutamate           5.6         15           2
 F phenylalanine       4.1         11           1
 G glycine             5.9         16           1
 H histidine           2.6          7           1
 I isoleucine          2.6          7           1
 K lysine              3.7         10           2
 L leucine             5.9         16           2
 M methionine          3.0          8           1
 N asparagine          4.1         11           1
 P proline             7.1         19           1
 Q glutamine           4.5         12           1
 R arginine            7.1         19           4
 S serine             17.1         46           3
 T threonine           4.8         13           1
 V valine              1.1          3           1
 W tryptophan          1.1          3           1
 Y tyrosine            4.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox B5 
HOXA5                 0.561   homeobox A5 
HOXC5                 0.291   homeobox C5 
HOXA4                 0.245   homeobox A4 
HOXC4                 0.245   homeobox C4 
HOXC4                 0.245   homeobox C4 
HOXB4                 0.233   homeobox B4 
HOXB6                 0.229   homeobox B6 
HOXD4                 0.222   homeobox D4 
HOXA7                 0.208   homeobox A7 
HOXA6                 0.208   homeobox A6 
HOXB7                 0.200   homeobox B7 
HOXC6                 0.198   homeobox C6 isoform 2 
HOXC6                 0.198   homeobox C6 isoform 1 
HOXA3                 0.197   homeobox A3 isoform a 
HOXA3                 0.197   homeobox A3 isoform a 
HOXB8                 0.183   homeobox B8 
HOXC8                 0.171   homeobox C8 
HOXD8                 0.164   homeobox D8 
HOXD3                 0.158   homeobox D3 
HOXA10                0.148   homeobox A10 isoform a 
HOXB3                 0.148   homeobox B3 
HOXA3                 0.145   homeobox A3 isoform b 
HOXA2                 0.137   homeobox A2 
PDX1                  0.135   pancreatic and duodenal homeobox 1 
HOXD9                 0.135   homeobox D9 
HOXD10                0.133   homeobox D10 
CDX2                  0.133   caudal type homeobox 2 
HOXB2                 0.129   homeobox B2 
CDX1                  0.129   caudal type homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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