Guide to the Human Genome
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Name: HOXC4 Sequence: fasta or formatted (264aa) NCBI GI: 24497538
Description:

homeobox C4

Referenced in:

HOX Genes

Other entries for this name:
alt mRNA [264aa] homeobox C4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         20           2
 C cysteine            1.9          5           1
 D aspartate           2.3          6           1
 E glutamate           6.8         18           2
 F phenylalanine       1.5          4           1
 G glycine             4.5         12           2
 H histidine           5.3         14           3
 I isoleucine          3.8         10           1
 K lysine              4.5         12           2
 L leucine             4.9         13           1
 M methionine          1.9          5           1
 N asparagine          3.4          9           1
 P proline            13.3         35           5
 Q glutamine           6.1         16           2
 R arginine            7.6         20           4
 S serine             11.7         31           2
 T threonine           4.5         12           1
 V valine              1.9          5           1
 W tryptophan          1.1          3           1
 Y tyrosine            5.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox C4 
HOXC4                 1.000   homeobox C4 
HOXB4                 0.474   homeobox B4 
HOXD4                 0.439   homeobox D4 
HOXA4                 0.374   homeobox A4 
LOC100294456          0.264   PREDICTED: similar to Homeobox protein Hox-C4 [Homo...
HOXA5                 0.242   homeobox A5 
HOXB5                 0.236   homeobox B5 
HOXC5                 0.206   homeobox C5 
HOXB6                 0.199   homeobox B6 
HOXA7                 0.193   homeobox A7 
HOXB7                 0.188   homeobox B7 
HOXA6                 0.180   homeobox A6 
HOXA3                 0.169   homeobox A3 isoform a 
HOXA3                 0.169   homeobox A3 isoform a 
HOXC6                 0.167   homeobox C6 isoform 2 
HOXC6                 0.167   homeobox C6 isoform 1 
HOXD3                 0.162   homeobox D3 
HOXB8                 0.158   homeobox B8 
CDX1                  0.156   caudal type homeobox 1 
HOXB2                 0.156   homeobox B2 
HOXB3                 0.154   homeobox B3 
PDX1                  0.151   pancreatic and duodenal homeobox 1 
HOXD8                 0.143   homeobox D8 
HOXA1                 0.138   homeobox A1 isoform a 
HOXB1                 0.136   homeobox B1 
HOXA2                 0.132   homeobox A2 
CDX2                  0.132   caudal type homeobox 2 
HOXC8                 0.132   homeobox C8 
GSX2                  0.130   GS homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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