Guide to the Human Genome
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Name: HOXB7 Sequence: fasta or formatted (217aa) NCBI GI: 85068580
Description:

homeobox B7

Referenced in:

HOX Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         26           2
 C cysteine            1.8          4           1
 D aspartate           2.3          5           1
 E glutamate           8.3         18           6
 F phenylalanine       4.6         10           1
 G glycine            10.1         22           4
 H histidine           1.4          3           1
 I isoleucine          2.3          5           1
 K lysine              4.6         10           2
 L leucine             5.1         11           1
 M methionine          2.8          6           1
 N asparagine          3.7          8           1
 P proline             4.6         10           1
 Q glutamine           5.1         11           1
 R arginine            7.8         17           4
 S serine              9.2         20           3
 T threonine           6.0         13           2
 V valine              1.4          3           1
 W tryptophan          1.4          3           1
 Y tyrosine            5.5         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox B7 
HOXA7                 0.520   homeobox A7 
HOXB6                 0.293   homeobox B6 
HOXB8                 0.279   homeobox B8 
HOXA6                 0.265   homeobox A6 
HOXC8                 0.260   homeobox C8 
HOXC6                 0.258   homeobox C6 isoform 2 
HOXC6                 0.258   homeobox C6 isoform 1 
HOXD4                 0.255   homeobox D4 
HOXA5                 0.251   homeobox A5 
HOXB5                 0.246   homeobox B5 
HOXD8                 0.241   homeobox D8 
HOXC4                 0.239   homeobox C4 
HOXC4                 0.239   homeobox C4 
HOXC5                 0.234   homeobox C5 
HOXB4                 0.225   homeobox B4 
HOXA4                 0.222   homeobox A4 
HOXD9                 0.177   homeobox D9 
HOXD3                 0.168   homeobox D3 
HOXC9                 0.163   homeobox C9 
PDX1                  0.163   pancreatic and duodenal homeobox 1 
HOXA10                0.163   homeobox A10 isoform a 
MEOX2                 0.158   mesenchyme homeobox 2 
CDX2                  0.158   caudal type homeobox 2 
HOXA2                 0.156   homeobox A2 
HOXA3                 0.156   homeobox A3 isoform b 
HOXA3                 0.156   homeobox A3 isoform a 
HOXA3                 0.156   homeobox A3 isoform a 
MNX1                  0.156   homeo box HB9 
HOXB3                 0.154   homeobox B3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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