Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LTBP3 Sequence: fasta or formatted (1303aa) NCBI GI: 194328809
Description:

latent transforming growth factor beta binding protein 3 isoform 1

Referenced in:

Extracellular Matrix
TGF-beta Family

Other entries for this name:
alt prot [1256aa] latent transforming growth factor beta binding protein 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         80           2
 C cysteine            9.7        126           3
 D aspartate           5.4         70           2
 E glutamate           6.1         80           3
 F phenylalanine       2.2         29           1
 G glycine            11.4        148           4
 H histidine           3.0         39           2
 I isoleucine          2.3         30           1
 K lysine              2.7         35           2
 L leucine             6.4         83          10
 M methionine          0.8         10           1
 N asparagine          3.3         43           2
 P proline            10.3        134           3
 Q glutamine           5.0         65           2
 R arginine            6.4         84           3
 S serine              7.0         91           2
 T threonine           4.0         52           3
 V valine              4.9         64           3
 W tryptophan          0.7          9           1
 Y tyrosine            2.4         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   latent transforming growth factor beta binding prot... 
LTBP3                 0.954   latent transforming growth factor beta binding prote...
LTBP1                 0.327   latent transforming growth factor beta binding prote...
LTBP1                 0.327   latent transforming growth factor beta binding prote...
LTBP2                 0.268   latent transforming growth factor beta binding protei...
LTBP4                 0.215   latent transforming growth factor beta binding prot...
LTBP4                 0.206   latent transforming growth factor beta binding prot...
LTBP4                 0.206   latent transforming growth factor beta binding prot...
FBN3                  0.155   fibrillin 3 precursor 
FBN2                  0.141   fibrillin 2 precursor 
FBN1                  0.133   fibrillin 1 precursor 
MEGF6                 0.070   EGF-like-domain, multiple 3 
NOTCH3                0.069   Notch homolog 3 
NOTCH1                0.068   notch1 preproprotein 
NOTCH4                0.067   notch4 preproprotein 
NOTCH2                0.067   notch 2 preproprotein 
HMCN1                 0.067   hemicentin 1 
FBLN2                 0.064   fibulin 2 isoform b precursor 
FBLN1                 0.062   fibulin 1 isoform C precursor 
FBLN2                 0.062   fibulin 2 isoform a precursor 
FBLN1                 0.062   fibulin 1 isoform D 
FBLN1                 0.061   fibulin 1 isoform B precursor 
FBLN1                 0.061   fibulin 1 isoform A precursor 
EFEMP2                0.058   EGF-containing fibulin-like extracellular matrix pr...
SCUBE3                0.057   signal peptide, CUB domain, EGF-like 3 
JAG2                  0.056   jagged 2 isoform b precursor 
JAG2                  0.056   jagged 2 isoform a precursor 
SCUBE1                0.055   signal peptide, CUB domain, EGF-like 1 
MATN2                 0.055   matrilin 2 isoform b precursor 
MATN2                 0.055   matrilin 2 isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press